Table 2 Number of DEGs in each comparison belonging to the main grain quality-related classes of genes
From: Deep sequencing transcriptional fingerprinting of rice kernels for dissecting grain quality traits
| Â | Tot. | ARB vs. BAL | ARB vs. CAR | ARB vs. GV | ARB vs. VN | ARB vs. VOL | BAL vs. CAR | BAL vs. GV | BAL vs. VN | BAL vs. VOL | CAR vs. GV | CAR vs. VN | CAR vs. VOL | GV vs. VN | GV vs. VOL | VN vs. VOL |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Starch biosynthesis (GO:0019252) | 17 (8) | 8 | 11 | 9 | 5 | 8 | 3 | 3 | 9 | 7 | 3 | 8 | 7 | 4 | 6 | 10 |
Starch metabolism (GO:0005982) | 16 (6) | 7 | 11 | 8 | 8 | 7 | 8 | 5 | 10 | 9 | 5 | 6 | 10 | 8 | 6 | 11 |
Starch catabolic process (GO:0005983) | 10 (3) | 6 | 6 | 5 | 7 | 7 | 7 | 3 | 3 | 5 | 4 | 4 | 6 | 3 | 3 | 4 |
Seed storage proteins (GO:0045735) | 66 (17) | 24 | 25 | 23 | 29 | 26 | 25 | 16 | 25 | 34 | 22 | 25 | 26 | 19 | 22 | 26 |
Seed storage proteins transporters | 21 (14) | 3 | 6 | 5 | 10 | 7 | 4 | 3 | 7 | 10 | 2 | 6 | 8 | 4 | 4 | 5 |
Known allergens | 8 (2) | 1 | 1 | 2 | 1 | 5 | 2 | - | 3 | 1 | 1 | 2 | 3 | 2 | 1 | 2 |
Essential aminoacids biosynthesis | 70 (20) | 9 | 21 | 11 | 18 | 28 | 14 | 10 | 9 | 15 | 15 | 18 | 33 | 12 | 24 | 17 |
Essential aminoacids degradation | 9 (4) | - | 2 | 3 | 3 | 5 | - | - | 1 | 4 | 1 | - | 5 | 1 | 5 | 2 |
Tocochromanols biosynthesis | 27 (7) | 9 | 13 | 11 | 12 | 17 | 6 | 4 | 2 | 7 | 3 | 5 | 12 | 2 | 11 | 7 |
Sterols biosynthesis | 17 (5) | 8 | 5 | 6 | 9 | 10 | 3 | 5 | 5 | 11 | 4 | 3 | 10 | 4 | 9 | 7 |
Grain size | 8 (4) | 1 | 4 | 6 | 2 | 2 | 5 | 2 | 1 | 4 | 4 | 6 | 5 | 2 | 4 | 3 |
Transcription factors (GO:0003700) | 253 (36) | 96 | 125 | 89 | 118 | 165 | 48 | 38 | 74 | 110 | 34 | 76 | 131 | 52 | 103 | 111 |