Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp.

Endo, Akihito; Tanizawa, Yasuhiro; Tanaka, Naoto; Maeno, Shintaro; Kumar, Himanshu; Shiwa, Yuh; Okada, Sanae; Yoshikawa, Hirofumi; Dicks, Leon; Nakagawa, Junichi; Arita, Masanori

doi:10.1186/s12864-015-2339-x

Table 2 Gene content profiles obtained for Fructobacillus spp. and Leuconostoc spp.

From: Comparative genomics of Fructobacillus spp. and Leuconostoc spp. reveals niche-specific evolution of Fructobacillus spp.

	F. fructosus NRIC 1058^T	F. durionis DSM 19113^T	F. ficulneus JCM 12225^T	F. pseudoficulneus DSM 15468^T	F. tropaeoli F214-1^T	L. mesenteroides ATCC 8293^T	L. carnosum JB16	L. citreum KM20	L. fallax KCTC 3537^T	L. gelidum JB7	L. inhae KCTC 3774^T	L. kimchii IMSNU 11154^T	L. lactis KACC 91922	L. pseudomesenteroides 1159
[C] Energy production and conversion	40	34	41	36	43	69	49	66	39	67	50	68	56	61
[D] Cell cycle control, cell division, chromosome partitioning	35	36	41	37	43	37	33	40	24	33	23	45	30	38
[E] Amino acid transport and metabolism	112	106	159	137	160	192	152	129	110	136	116	179	139	152
[F] Nucleotide transport and metabolism	64	61	77	74	73	91	88	85	71	88	78	97	82	100
[G] Carbohydrate transport and metabolism	61	61	69	63	74	168	123	155	80	172	138	156	120	162
[H] Coenzyme transport and metabolism	51	49	54	49	64	91	73	80	52	72	64	98	78	78
[I] Lipid transport and metabolism	40	43	44	43	51	62	56	71	40	71	59	64	58	57
[J] Translation, ribosomal structure and biogenesis	180	175	188	180	190	193	191	185	162	193	166	198	186	191
[K] Transcription	93	84	89	87	115	133	128	129	93	150	132	153	100	151
[L] Replication, recombination and repair	110	86	97	86	115	110	100	105	57	92	95	119	96	125
[M] Cell wall/membrane/envelope biogenesis	84	77	73	74	84	110	92	105	81	98	75	102	93	94
[N] Cell motility	10	7	6	4	11	11	12	14	7	12	5	17	13	12
[O] Posttranslational modification, protein turnover, chaperones	46	37	47	40	49	63	59	59	39	54	44	67	46	58
[P] Inorganic ion transport and metabolism	49	48	51	54	54	81	70	77	46	61	56	83	63	70
[Q] Secondary metabolites biosynthesis, transport and catabolism	10	7	12	9	12	18	10	13	10	11	12	11	15	15
[R] General function prediction only	67	55	78	67	85	99	83	87	64	89	77	103	79	95
[S] Function unknown	111	100	90	94	114	133	109	122	95	116	108	124	107	118
[T] Signal transduction mechanisms	31	27	36	29	36	60	49	55	46	48	44	60	51	58
[U] Intracellular trafficking, secretion, and vesicular transport	15	12	11	15	24	12	15	11	12	15	10	14	14	12
[V] Defense mechanisms	34	23	37	37	26	35	37	35	24	47	43	52	35	59
[X] Mobilome: prophages, transposons	44	12	26	9	33	27	21	42	18	12	51	43	38	58

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ISSN: 1471-2164

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