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Table 3 Twenty-eight previously unanchored scaffolds for which there were markers in either the Williams 82 × PI479752 (WP) or the Essex × Williams 82 (EW) map, or both, to define their genome position

From: Construction of high resolution genetic linkage maps to improve the soybean genome sequence assembly Glyma1.01

SNP ID Scaffold Physical Position of SNP in the scaffold LG based on WP population Position based on WP population (cM) LG_based on EW population Position based on EW population (cM) Total scaffold length
BARC_1.01_scaffold_1036_3469_T_C scaffold_1036 3469 8 117.851    5173
BARC_1.01_scaffold_1448_1683_A_C scaffold_1448 1683 17 80.252    3995
BARC_1.01_scaffold_1448_67_G_A scaffold_1448 67 17 80.252    
BARC_1.01_scaffold_1454_1730_G_A scaffold_1454 1730 1    87.464 3982
BARC_1.01_scaffold_1484_809_T_C scaffold_1484 809 10 57.485    4368
BARC_1.01_scaffold_1605_1791_T_C scaffold_1605 1791 9 82.196 9 80.192 3584
BARC_1.01_scaffold_169_21520_G_A scaffold_169 21520 11 90.373    25752
BARC_1.01_scaffold_169_9083_G_T scaffold_169 9083 11 90.373    
BARC_1.01_scaffold_2048_399_C_A scaffold_2048 399 16    69.671 1779
BARC_1.01_scaffold_2182_1012_T_C scaffold_2182 1012 13 92.688 13 134.477 1349
BARC_1.01_scaffold_22_540761_G_A scaffold_22 540761 8    120.532 1088050
BARC_1.01_scaffold_22_985719_G_A scaffold_22 985719 8    120.532  
BARC_1.01_scaffold_2280_754_G_A scaffold_2280 754 18    69.307 1018
BARC_1.01_scaffold_23_881897_T_C scaffold_23 881897 1 46.789    939397
BARC_1.01_scaffold_24_197620_T_C scaffold_24 197620 10    52.909 634454
BARC_1.01_scaffold_245_10767_A_G scaffold_245 10767 11 87.989    17525
BARC_1.01_scaffold_248_8179_A_G scaffold_248 8179 7 12.253    17311
BARC_1.01_scaffold_303_12268_T_G scaffold_303 12268 3 28.82    17325
BARC_1.01_scaffold_317_4132_A_G scaffold_317 4132 9 101.035    14271
BARC_1.01_scaffold_36_219042_G_A scaffold_36 219042 2 75.178 2 97.615 280716
BARC_1.01_scaffold_469_2885_C_T scaffold_469 2885 1    55.543 10200
BARC_1.01_scaffold_476_2115_T_C scaffold_476 2115 9 57.081 9 48.989 10120
BARC_1.01_scaffold_476_9307_A_C scaffold_476 9307 9 57.118 9 49.034  
BARC_1.01_scaffold_48_40550_T_C scaffold_48 40550 9 134.091    139886
BARC_1.01_scaffold_554_3651_G_A scaffold_554 3651 16    99.322 9124
BARC_1.01_scaffold_66_159931_A_G scaffold_66 159931 9 60.405 9 54.911 170827
BARC_1.01_scaffold_732_107_A_G scaffold_732 107 18 63.953    6997
BARC_1.01_scaffold_825_3928_G_T scaffold_825 3928 2 75.353    6293
BARC_1.01_scaffold_84_64248_T_C scaffold_84 64248 10 52.937    69299
BARC_1.01_scaffold_91_31407_G_A scaffold_91 31407 9 58.919 9 51.365 63120
BARC_1.01_scaffold_938_1798_A_G scaffold_938 1798 15 83.907 15 102.19 6175
BARC_1.01_scaffold_97_54858_G_A scaffold_97 54858 9 58.919    57671
Total length of newly anchored scaffolds        3609761