| Recovereda
| Identicalb
| Matchingb
| Otherb
|
---|
TCUR (loci: 136) |
TFRAMA | 129; 94.9 % | 100; 77.5 % | 15; 11.6 % | 14; 10.9 % |
TGNOMON | 135; 99.3 % | 114; 84.4 % | 8; 5.9 % | 13; 9.6 % |
TKIM | 122; 89.7 % | 50; 41.0 % | 16; 13.1 % | 56; 45.9 % |
TGENSCAN | 133; 97.8 % | 13; 9.8 % | 6; 4.5 % | 114; 85.7 % |
TGNOMON (loci: 19,746) |
TFRAMA | 14,387; 72.9 % | 8463; 58.8 % | 2127; 14.8 % | 3797; 26.4 % |
TKIM | 14,933; 75.6 % | 5382; 36.0 % | 2647; 17.7 % | 6904; 46.2 % |
TGENSCAN | 16,082; 81.4 % | 1584; 9.8 % | 1044; 6.5 % | 13,454; 83.7 % |
- Each orthologous set of transcripts was compared to TCUR and TGNOMON, after filtering of alignments with perfectly aligned CDS (>99 % recovered in genome). CDSs are considered overlapping if they share nucleotides on the same strand. CDS overlap cases were classified to the following categories: identical (identical exons), matching (shared exons), or ‘other’ (unequal number of exons)
-
aNumber of overlapping loci and their proportion of the loci in reference
-
bNumber of identical, matching and other transcript models and their proportion of the loci in overlap