Transcriptome profiling in fast versus slow-growing rainbow trout across seasonal gradients

BMC Genomics

Table 1 Statistics on the number and type of reads submitted for the transcriptome analysis across all 12 fish sampled in the study, and percentage of reads that were remained unmatched to the reference database

Fish #	Merged reads	Forward paired	Reverse paired	Forward unmatched	Reverse unmatched	Total reads^a	% unmatched to reference^b
1	2018242	503176	503177	324139	318662	5685638	6.20 %
2	7439746	1015334	1015328	954321	96864	18833115	8.93 %
3	6854344	7192502	7192481	1685389	1738903	31517963	8.88 %
4	4432100	401143	401139	514270	541751	10722503	8.47 %
5	3305888	131536	131537	389340	402963	7667152	9.36 %
6	7047261	267390	267382	948643	973747	16551684	9.20 %
7	3496699	3161006	3160977	789221	799779	14904381	8.55 %
8	6645641	139886	139911	854658	878138	15303875	8.24 %
9	6493912	276424	276430	840793	879280	15260751	7.47 %
10	7582472	991054	991050	1111996	1102768	19361812	6.88 %
11	4176263	5269718	5269704	1007420	1005070	20904438	7.94 %
12	8892226	1161514	1161518	1436781	1456964	23001229	7.52 %

^aIncludes 2x Merged Read Count
^bIndicated the percentage of reads listed in the ‘Total Reads’ column that remained unmatched to the Berthelot et al. (2014), DFCI RTGI, SRR020739, SRR020740, and de novo contig build reference database compilation

ISSN: 1471-2164