Table 2 KEGG functional modules distinctive for the P. aeruginosa pangenome gene category
From: Pangenome-wide and molecular evolution analyses of the Pseudomonas aeruginosa species
KEGG module number | Description | Genes |
|---|---|---|
Core genome | ||
M00064 | ADP-L-glycero-D-manno-heptose biosynthesis | 2 |
M00493 | AlgZ-AlgR (alginate production) two-component regulatory system | 1 |
M00235 | Arginine/ornithine transport system | 3 |
M00531 | Assimilatory nitrate reduction | 1 |
M00475 | BarA-UvrY (central carbon metabolism) two-component regulatory system | 2 |
M00086 | Beta-Oxidation | 1 |
M00123, M00573, M00577 | Biotin biosynthesis | 3 |
M00364, M00366 | C10-C20 isoprenoid biosynthesis | 2 |
M00170, M00171 | C4-dicarboxylic acid cycle | 2 |
M00168 | CAM (Crassulacean acid metabolism) | 1 |
M00722, M00727, M00728 | Cationic antimicrobial peptide (CAMP) resistance | 3 |
M00256 | Cell division transport system | 1 |
M00010 | Citrate cycle | 4 |
M00120 | Coenzyme A biosynthesis | 3 |
M00338 | Cysteine biosynthesis | 1 |
M00154, M00155 | Cytochrome c oxidase | 3 |
M00417 | Cytochrome o ubiquinol oxidase | 3 |
M00552 | D-galactonate degradation, De Ley-Doudoroff pathway | 2 |
M00596 | Dissimilatory sulfate reduction | 1 |
M00542 | EHEC/EPEC pathogenicity signature | 2 |
M00008 | Entner-Doudoroff pathway | 1 |
M00445 | EnvZ-OmpR (osmotic stress response) two-component regulatory system | 3 |
M00515 | FlrB-FlrC (polar flagellar synthesis) two-component regulatory system | 1 |
M00729 | Fluoroquinolone resistance | 1 |
M00344, M00345 | Formaldehyde assimilation | 3 |
M00497 | GlnL-GlnG (nitrogen regulation) two-component regulatory system | 1 |
M00605 | Glucose/mannose transport system | 2 |
M00012 | Glyoxylate cycle | 1 |
M00050 | Guanine ribonucleotide biosynthesis, IMP | 3 |
M00259 | Heme transport system | 1 |
M00045 | Histidine degradation | 4 |
M00226 | Histidine transport system | 1 |
M00620 | Incomplete reductive citrate cycle | 3 |
M00131 | Inositol phosphate metabolism | 1 |
M00190 | Iron (III) transport system | 4 |
M00535 | Isoleucine biosynthesis | 3 |
M00113 | Jasmonic acid biosynthesis | 1 |
M00505 | KinB-AlgB (alginate production) two-component regulatory system | 2 |
M00080 | Lipopolysaccharide biosynthesis | 1 |
M00320 | Lipopolysaccharide export system | 2 |
M00255 | Lipoprotein-releasing system | 1 |
M00116 | Menaquinone biosynthesis | 1 |
M00740 | Methylaspartate cycle | 2 |
M00189 | Molybdate transport system | 3 |
M00711 | Multidrug resistance, efflux pump MdtIJ | 1 |
M00115 | NAD biosynthesis | 3 |
M00144 | NADH:quinone oxidoreductase | 13 |
M00471 | NarX-NarL (nitrate respiration) two-component regulatory system | 1 |
M00622 | Nicotinate degradation | 1 |
M00615 | Nitrate assimilation | 2 |
M00438 | Nitrate/nitrite transport system | 1 |
M00439 | Oligopeptide transport system | 1 |
M00209 | Osmoprotectant transport system | 2 |
M00004, M00007 | Pentose phosphate pathway | 6 |
M00024 | Phenylalanine biosynthesis | 3 |
M00434 | PhoR-PhoB (phosphate starvation response) | 1 |
M00222 | Phosphate transport system | 4 |
M00501 | PilS-PilR (type 4 fimbriae synthesis) two-component regulatory system | 1 |
M00133 | Polyamine biosynthesis | 3 |
M00015 | Proline biosynthesis | 3 |
M00247, M00258 | Putative ABC transport system | 3 |
M00193 | Putative spermidine/putrescine transport system | 7 |
M00046 | Pyrimidine degradation | 1 |
M00053 | Pyrimidine deoxyribonuleotide biosynthesis, CDP/CTP | 5 |
M00052 | Pyrimidine ribonucleotide biosynthesis, UMP | 3 |
M00377 | Reductive acetyl-CoA pathway (Wood-Ljungdahl pathway) | 1 |
M00167 | Reductive pentose phosphate cycle | 5 |
M00523 | RegB-RegA (redox response) two-component regulatory system | 2 |
M00125 | Riboflavin biosynthesis, GTP | 2 |
M00394 | RNA degradosome | 1 |
M00308 | Semi-phosphorylative Entner-Doudoroff pathway | 2 |
M00185 | Sulfate transport system | 2 |
M00436 | Sulfonate transport system | 3 |
M00435 | Taurine transport system | 1 |
M00089 | Triacylglycerol biosynthesis | 2 |
M00332 | Type III secretion system | 2 |
M00025, M00040 | Tyrosine biosynthesis | 4 |
M00117, M00128 | Ubiquinone biosynthesis | 7 |
M00029 | Urea cycle | 3 |
M00651 | Vancomycin resistance | 2 |
M00241 | Vitamin B12 transport system | 1 |
M00660 | Xanthomonas spp. pathogenicity signature | 2 |
M00242 | Zinc transport system | 2 |
Accessory genome | ||
M00502 | GlrK-GlrR (amino sugar metabolism) two-component regulatory system | 1 |
M00533 | Homoprotocatechuate degradation | 2 |
M00240 | Iron complex transport system | 3 |
M00005 | PRPP biosynthesis | 1 |
M00473 | UhpB-UhpA (hexose phosphates uptake) two-component regulatory system | 1 |
M00644 | Vanadium resistance | 1 |
Unique genes | ||
M00653 | AauS-AauR (acidic amino acids utilization) two-component regulatory system | 1 |
M00500 | AtoS-AtoC (cPHB biosynthesis) two-component regulatory system | 1 |
M00450 | BaeS-BaeR (envelope stress response) two-component regulatory system | 1 |
M00104 | Bile acid biosynthesis | 1 |
M00581 | Biotin transport system | 1 |
M00569 | Catechol meta-cleavage | 4 |
M00582 | Energy-coupling factor transport system | 1 |
M00760 | Erythromycin resistance | 1 |
M00524 | FixL-FixJ (nitrogen fixation) two-component regulatory system | 1 |
M00713 | Fluoroquinolone resistance | 1 |
M00059 | Glycosaminoglycan biosynthesis | 1 |
M00499 | HydH-HydG (metal tolerance) two-component regulatory system | 1 |
M00714, M00645 | Multidrug resistance | 2 |
M00664 | Nodulation | 1 |
M00549 | Nucleotide sugar biosynthesis | 1 |
M00267 | PTS system, N-acetylglucosamine-specific II component | 1 |