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Table 4 Number of sites from each candidate call set that have k = 3 L1 Classification scores in each range, where the score is the proportion ρ of random sites that are closer to the center than each candidate site. These numbers are after filtering sites for which the flanking regions have low mapping quality or high coverage

From: svclassify: a method to establish benchmark structural variant calls

  Filtered <0.68 0.68-0.9 0.9-0.97 0.97-0.99 0.99-0.997 0.997-0.999 >0.999
Random Personalis 229 3025 501 177 65 3 0 0
Personalis Gold 106 8 10 44 414 409 1302 13
Personalis Validated 3 0 0 0 10 7 19 0
Personalis Non-validated 0 1 0 0 3 0 1 0
1000 Genomes 382 56 103 257 714 388 780 5
Spiral Gen Insertions 1 0 0 0 12 16 41 0
Deduplicated Deletions 195 45 61 145 675 513 1434 14