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Table 1 Verification of DEGs using real-time qRT-PCR

From: De novo transcriptome analyses of host-fungal interactions in oil palm (Elaeis guineensis Jacq.)

Unigene Putative identity Fold change of expression using
   Transcriptome sequencing Real-time qRT-PCR
   In G-treated oil palm seedlings compared to untreated seedlings
15029 1-Aminocyclopropane-1-carboxylate oxidase 107 4.84±0.43
13913a 1-Aminocyclopropane-1-carboxylate oxidase −2.70 1.01±0.03
21170 Chitinase 12.5 3.59±0.58
21171 Chitinase 16.8 2.93±0.84
21174 Chitinase Class III 10.1 4.03±0.91
595 Early flowering protein 5.85 3.25±0.66
23670 β-1,3-Glucanase 6.17 9.18±0.63
4320a NBS-LRR-resistance protein −10.1 1.88±0.16
152 Pathogenesis-related protein 20.4 4.84±0.36
23132 Pathogenesis-related protein 4 8.40 3.03±0.54
15545 Type 2 ribosome-inactivating protein precursor 9.26 2.39±0.34
15323 Thaumatin-like protein 17.5 2.29±0.16
28483 Predicted protein 2.54 2.29±0.15
28249 Hypersensitive induced reaction1 6.37 1.45±0.16
18366 Hypothetical protein SORBIDRAFT 02g042630 8.76 1.09±0.13
18282a Fiber protein Fb2 −1.12 1.25±0.08
308 Ethylene insensitive-like protein 4 1.26 1.61±0.11
   In T-treated oil palm seedlings compared to untreated seedlings
13913 1-Aminocyclopropane-1-carboxylate oxidase −12.9 −1.82±0.04
21170 Chitinase 8.47 3.85±0.95
4320 NBS-LRR-resistance protein 10.4 3.21±0.48
25702 Nitrate reductase 1 9.46 2.19±0.24
  1. aGenes that show discrepancies in their gene expression patterns when measured by transcriptome sequencing and real-time qRT-PCR