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Table 2 Summary of GO terms that are enriched in DEGs of G-treated oil palm roots compared to untreated roots

From: De novo transcriptome analyses of host-fungal interactions in oil palm (Elaeis guineensis Jacq.)

GO terms that are enriched in DEGs of G-treated oil palm roots compared to untreated oil palm roots

Biological process

Up-regulated genes

In G-treatment only

  

GO:0030636

acetate derivative biosynthetic process

GO:0046483

heterocycle metabolic process

GO:0030635

acetate derivative metabolic process

GO:0006972

hyperosmotic response

GO:0006083

acetate metabolic process

GO:0006811

ion transport

GO:0006026

aminoglycan catabolic process

GO:0006629

lipid metabolic process

GO:0006022

aminoglycan metabolic process

GO:0051179

localization

GO:0019438

aromatic compound biosynthetic process

GO:0007263

nitric oxide mediated signal transduction

GO:0015976

carbon utilization

GO:0071704

organic substance metabolic process

GO:0016052

carbohydrate catabolic process

GO:0015846

polyamine transport

GO:0005975

carbohydrate metabolic process

GO:0009152

purine ribonucleotide biosynthetic process

GO:0015977

carbon fixation

GO:0032268

regulation of cellular protein metabolic process

GO:0071281

cellular response to iron ion

GO:0010035

response to inorganic substance

GO:0071446

cellular response to salicylic acid stimulus

GO:0010039

response to iron ion

GO:0009805

coumarin biosynthetic process

GO:0019748

secondary metabolic process

GO:0006952

defense response

GO:0001736

establishment of planar polarity

GO:0006097

glyoxylate cycle

GO:0006099

tricarboxylic acid cycle

In both G- and T-treatments

  

GO:0043450

alkene biosynthetic process

GO:0009056

catabolic process

GO:0009058

biosynthetic process

GO:0006091

generation of precursor metabolites and energy

GO:0055114

oxidation-reduction process

GO:0010817

regulation of hormone levels

GO:0080167

response to karrikin

GO:0051246

regulation of protein metabolic process

GO:0044283

small molecule biosynthetic process

GO:0006414

translational elongation

In T-treatment only

  

GO:0015837

amine transport

GO:0044242

cellular lipid catabolic process

GO:0046942

carboxylic acid transport

GO:0006732

coenzyme metabolic process

GO:0044249

cellular biosynthetic process

GO:0006006

glucose metabolic process

GO:0034754

cellular hormone metabolic process

GO:0071705

nitrogen compound transport

Down-regulated genes

In G-treatment only

  

GO:0071103

DNA conformation change

GO:0015979

photosynthesis

GO:0022900

electron transport chain

GO:0006412

translation

In both G- and T-treatments

  

GO:0006091

generation of precursor metabolites and energy

GO:0015992

proton transport

GO:0006818

hydrogen transport

GO:0042254

ribosome biogenesis

In T-treatment only

  

GO:0006119

oxidative phosphorylation

GO:0010200

response to chitin

Cellular compartment

  

Up-regulated genes

In G-treatment only

  

GO:0009341

beta-galactosidase complex

GO:0005887

integral to plasma membrane

GO:0071944

cell periphery

GO:0016020

membrane

GO:0005618

cell wall

GO:0030117

membrane coat

GO:0048475

coated membrane

GO:0044425

membrane part

GO:0030312

external encapsulating structure

GO:0005773

vacuole

GO:0030660

Golgi-associated vesicle membrane

  

In both G- and T-treatments

  

GO:0009325

nitrate reductase complex

  

Down-regulated genes

In G-treatment only

  

GO:0044429

mitochondrial part

GO:0032993

protein-DNA complex

GO:0043228

non-membrane-bounded organelle

GO:0045259

proton-transporting ATP synthase complex

GO:0000786

nucleosome

GO:0016469

proton-transporting two-sector ATPase complex

GO:0031984

organelle subcompartment

GO:0009579

thylakoid

GO:0034357

photosynthetic membrane

GO:0042716

plasma membrane-derived chromatophore

GO:0030077

plasma membrane light-harvesting complex

  

In both G- and T-treatments

  

GO:0030529

ribonucleoprotein complex

GO:0005840

ribosome

Molecular function

Up-regulated genes

In G-treatment only

  

GO:0009815

1-aminocyclopropane-1-carboxylate oxidase activity

GO:0016829

lyase activity

GO:0004013

adenosylhomocysteinase activity

GO:0003796

lysozyme activity

GO:0030246

carbohydrate binding

GO:0000287

magnesium ion binding

GO:0003824

catalytic activity

GO:0046872

metal ion binding

GO:0016206

catechol O-methyltransferase activity

GO:0016210

naringenin-chalcone synthase activity

GO:0043169

cation binding

GO:0016491

oxidoreductase activity

GO:0016405

CoA-ligase activity

GO:0016903

oxidoreductase activity, acting on the aldehyde or oxo group of donors

GO:0016798

hydrolase activity, acting on glycosyl bonds

GO:0016616

oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0005222

intracellular cAMP activated cation channel activity

GO:0030414

peptidase inhibitor activity

GO:0043167

ion binding

GO:0004665

prephenate dehydrogenase (NADP+) activity

GO:0005506

iron ion binding

GO:0022857

transmembrane transporter activity

GO:0052633

isocitrate hydro-lyase (cis-aconitate-forming) activity

GO:0005215

transporter activity

GO:0016874

ligase activity

GO:0016877

ligase activity, forming carbon-sulfur bonds

In both G- and T-treatments

  

GO:0005275

amine transmembrane transporter activity

GO:0009703

nitrate reductase (NADH) activity

GO:0003680

AT DNA binding

GO:0016614

oxidoreductase activity, acting on CH-OH group of donors

GO:0004108

citrate (Si)-synthase activity

GO:0050242

pyruvate, phosphate dikinase activity

In T-treatment only

  

GO:0004022

alcohol dehydrogenase (NAD) activity

GO:0005342

organic acid transmembrane transporter activity

GO:0015174

basic amino acid transmembrane transporter activity

GO:0008756

o-succinylbenzoate-CoA ligase activity

GO:0020037

heme binding

GO:0016661

oxidoreductase activity, acting on other nitrogenous compounds as donors

GO:0009678

hydrogen-translocating pyrophosphatase activity

GO:0030598

rRNA N-glycosylase activity

GO:0004427

inorganic diphosphatase activity

GO:0046906

tetrapyrrole binding

Down-regulated genes

In G-treatment only

  

GO:0004767

sphingomyelin phosphodiesterase activity

GO:0016762

xyloglucan:xyloglucosyl transferase activity

In both G- and T-treatments

  

GO:0045158

electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity

GO:0003735

structural constituent of ribosome

GO:0045156

electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

GO:0005198

structural molecule activity

In T-treatment only

  

GO:0043168

anion binding

GO:0003954

NADH dehydrogenase activity

GO:0004427

inorganic diphosphatase activity

GO:0016651

oxidoreductase activity, acting on NADH or NADPH

GO:0005506

iron ion binding

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