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Table 2 Summary of GO terms that are enriched in DEGs of G-treated oil palm roots compared to untreated roots

From: De novo transcriptome analyses of host-fungal interactions in oil palm (Elaeis guineensis Jacq.)

GO terms that are enriched in DEGs of G-treated oil palm roots compared to untreated oil palm roots
Biological process
Up-regulated genes
In G-treatment only   
GO:0030636 acetate derivative biosynthetic process GO:0046483 heterocycle metabolic process
GO:0030635 acetate derivative metabolic process GO:0006972 hyperosmotic response
GO:0006083 acetate metabolic process GO:0006811 ion transport
GO:0006026 aminoglycan catabolic process GO:0006629 lipid metabolic process
GO:0006022 aminoglycan metabolic process GO:0051179 localization
GO:0019438 aromatic compound biosynthetic process GO:0007263 nitric oxide mediated signal transduction
GO:0015976 carbon utilization GO:0071704 organic substance metabolic process
GO:0016052 carbohydrate catabolic process GO:0015846 polyamine transport
GO:0005975 carbohydrate metabolic process GO:0009152 purine ribonucleotide biosynthetic process
GO:0015977 carbon fixation GO:0032268 regulation of cellular protein metabolic process
GO:0071281 cellular response to iron ion GO:0010035 response to inorganic substance
GO:0071446 cellular response to salicylic acid stimulus GO:0010039 response to iron ion
GO:0009805 coumarin biosynthetic process GO:0019748 secondary metabolic process
GO:0006952 defense response GO:0001736 establishment of planar polarity
GO:0006097 glyoxylate cycle GO:0006099 tricarboxylic acid cycle
In both G- and T-treatments   
GO:0043450 alkene biosynthetic process GO:0009056 catabolic process
GO:0009058 biosynthetic process GO:0006091 generation of precursor metabolites and energy
GO:0055114 oxidation-reduction process GO:0010817 regulation of hormone levels
GO:0080167 response to karrikin GO:0051246 regulation of protein metabolic process
GO:0044283 small molecule biosynthetic process GO:0006414 translational elongation
In T-treatment only   
GO:0015837 amine transport GO:0044242 cellular lipid catabolic process
GO:0046942 carboxylic acid transport GO:0006732 coenzyme metabolic process
GO:0044249 cellular biosynthetic process GO:0006006 glucose metabolic process
GO:0034754 cellular hormone metabolic process GO:0071705 nitrogen compound transport
Down-regulated genes
In G-treatment only   
GO:0071103 DNA conformation change GO:0015979 photosynthesis
GO:0022900 electron transport chain GO:0006412 translation
In both G- and T-treatments   
GO:0006091 generation of precursor metabolites and energy GO:0015992 proton transport
GO:0006818 hydrogen transport GO:0042254 ribosome biogenesis
In T-treatment only   
GO:0006119 oxidative phosphorylation GO:0010200 response to chitin
Cellular compartment   
Up-regulated genes
In G-treatment only   
GO:0009341 beta-galactosidase complex GO:0005887 integral to plasma membrane
GO:0071944 cell periphery GO:0016020 membrane
GO:0005618 cell wall GO:0030117 membrane coat
GO:0048475 coated membrane GO:0044425 membrane part
GO:0030312 external encapsulating structure GO:0005773 vacuole
GO:0030660 Golgi-associated vesicle membrane   
In both G- and T-treatments   
GO:0009325 nitrate reductase complex   
Down-regulated genes
In G-treatment only   
GO:0044429 mitochondrial part GO:0032993 protein-DNA complex
GO:0043228 non-membrane-bounded organelle GO:0045259 proton-transporting ATP synthase complex
GO:0000786 nucleosome GO:0016469 proton-transporting two-sector ATPase complex
GO:0031984 organelle subcompartment GO:0009579 thylakoid
GO:0034357 photosynthetic membrane GO:0042716 plasma membrane-derived chromatophore
GO:0030077 plasma membrane light-harvesting complex   
In both G- and T-treatments   
GO:0030529 ribonucleoprotein complex GO:0005840 ribosome
Molecular function
Up-regulated genes
In G-treatment only   
GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity GO:0016829 lyase activity
GO:0004013 adenosylhomocysteinase activity GO:0003796 lysozyme activity
GO:0030246 carbohydrate binding GO:0000287 magnesium ion binding
GO:0003824 catalytic activity GO:0046872 metal ion binding
GO:0016206 catechol O-methyltransferase activity GO:0016210 naringenin-chalcone synthase activity
GO:0043169 cation binding GO:0016491 oxidoreductase activity
GO:0016405 CoA-ligase activity GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors
GO:0016798 hydrolase activity, acting on glycosyl bonds GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0005222 intracellular cAMP activated cation channel activity GO:0030414 peptidase inhibitor activity
GO:0043167 ion binding GO:0004665 prephenate dehydrogenase (NADP+) activity
GO:0005506 iron ion binding GO:0022857 transmembrane transporter activity
GO:0052633 isocitrate hydro-lyase (cis-aconitate-forming) activity GO:0005215 transporter activity
GO:0016874 ligase activity GO:0016877 ligase activity, forming carbon-sulfur bonds
In both G- and T-treatments   
GO:0005275 amine transmembrane transporter activity GO:0009703 nitrate reductase (NADH) activity
GO:0003680 AT DNA binding GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
GO:0004108 citrate (Si)-synthase activity GO:0050242 pyruvate, phosphate dikinase activity
In T-treatment only   
GO:0004022 alcohol dehydrogenase (NAD) activity GO:0005342 organic acid transmembrane transporter activity
GO:0015174 basic amino acid transmembrane transporter activity GO:0008756 o-succinylbenzoate-CoA ligase activity
GO:0020037 heme binding GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors
GO:0009678 hydrogen-translocating pyrophosphatase activity GO:0030598 rRNA N-glycosylase activity
GO:0004427 inorganic diphosphatase activity GO:0046906 tetrapyrrole binding
Down-regulated genes
In G-treatment only   
GO:0004767 sphingomyelin phosphodiesterase activity GO:0016762 xyloglucan:xyloglucosyl transferase activity
In both G- and T-treatments   
GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity GO:0003735 structural constituent of ribosome
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity GO:0005198 structural molecule activity
In T-treatment only   
GO:0043168 anion binding GO:0003954 NADH dehydrogenase activity
GO:0004427 inorganic diphosphatase activity GO:0016651 oxidoreductase activity, acting on NADH or NADPH
GO:0005506 iron ion binding