|
sRNA name
|
Parent mRNA
|
Start
|
end
|
length
|
sRNA
|
mRNA
|
(based on RPKMs)
|
promoters
|
−35
|
−10
|
TSS
|
binding site
|
|
fwd_4
|
rbsB
|
14355
|
14537
|
183
|
596.8
|
102.8
|
Independent
|
1
|
14317
|
14342
|
14357
|
rpoD17, cynR, rpoD15, rpoD16, phoB
|
|
fwd_6
|
polA
|
28634
|
28755
|
122
|
549.8
|
110.5
|
Independent
|
1
|
28656
|
28676
|
28691
|
cytR, arcA, crp, rpoD15, rpoD17
|
|
fwd_15
|
ECA0044
|
55039
|
55291
|
253
|
66.8
|
27.4
|
Independent
|
1
|
55009
|
55029
|
55044
|
rpoD17, fis, rpoD15, rpoD16, phoB
|
|
fwd_19
|
expI
|
126355
|
126501
|
147
|
338.5
|
588.1
|
Co-expression
|
1
|
126418
|
126435
|
126450
|
metR, rpoD16
|
|
reg_seq13
|
aldA
|
139913
|
140154
|
242
|
136.8
|
30.4
|
Independent
|
1
|
140046
|
140063
|
140078
| |
|
reg_seq27
|
ECA0332
|
380584
|
380826
|
243
|
1660.5
|
389.3
|
Independent
|
1
|
380610
|
380631
|
380646
|
metJ
|
|
reg_seq31
|
ECA0449
|
515673
|
515910
|
238
|
363.3
|
528.7
|
Co-expression
|
1
|
515790
|
515813
|
515828
|
glpR, ihf, argR2, nagC, argR2, fnr, fis
|
|
reg_seq43
|
mdH
|
758603
|
758857
|
255
|
1759.1
|
1895.7
|
Co-expression
|
2
|
758751
|
758770
|
758789
|
glpR, fis, arcA, purR
|
| | | | | | | | | |
758444
|
758464
|
758479
| |
|
reg_seq142
|
ECA2516
|
2832294
|
2832530
|
237
|
514.2
|
77.5
|
Independent
|
1
|
2832185
|
2832205
|
2832220
|
purr, rpoD16
|
|
fwd_rfam4
|
rpiL
|
255260
|
255321
|
62
|
775.5
|
1856.1
|
Independent
| | | | |
lrp, hns
|
|
comp_seq5
|
glnA
|
34992
|
35234
|
243
|
858.8
|
1209.3
|
Co-expression
|
1
|
35262
|
35241
|
35226
|
rpoD15, rpoD16, phoB
|
|
comp_seq11
|
slmA
|
164026
|
164334
|
309
|
196.4
|
454.0
|
Independent
|
1
|
164395
|
164375
|
164360
|
arcA, rpoD17, rpoD15, rpoD16, phoB
|
|
comp_seq130
|
ECA2950
|
3295111
|
3295347
|
237
|
197.9
|
222.9
|
Co-expression
|
2
|
3295196
|
3295176
|
3295161
|
rpoD16, argR, arcA, ihf
|
| | | | | | | | | |
3295506
|
3295485
|
3295470
| |
|
rev_rfam22
|
glpC
|
4651380
|
4651485
|
109
|
348.2
|
40.8
|
Independent
|
1
|
4651583
|
4651562
|
4651547
|
Ada, rpoE, tyrR, fur, fur
|
|
dapZ
|
ECA3872 (dapB)
|
4332178
|
4332288
|
111
|
20.9
|
110.8
|
Independent
|
1
|
4332302
|
4332284
|
4332269
|
Ihf, argR2, rpoD16, argR,, fis, crp
|
