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Table 6 Southern bluefin tuna germ cell-specific genes from transcriptome assembly of gonad cells

From: Transcriptome analysis reveals differentially expressed genes associated with germ cell and gonad development in the Southern bluefin tuna (Thunnus maccoyii)

ORF id Length (bp) Genea CDs coverageb Annotated species Referencesc
m.177200 1104 cxcr4 Complete Stegastes partitus [107, 118, 119, 153, 154]
m.21888 1173 gfra1 Complete Xiphophorus maculatus [107, 155158]
m.72178 1647 ly75 Complete Haplochromis burtoni [8, 107, 159]
m.200580 681 nanos1 Complete S. partitus [160162]
m.83114 483 nanos2 Complete Dicentrarchus labrax [107, 156, 163, 164]
m.26953 5511 notch1 5’ partial S. partitus [107, 165]
m.156253 4419 pdgfra Complete S. partitus [103, 116, 166]
m.166899 1434 plzf 3’ partial O. niloticus [107, 155]
m.3709 1431 pou5f1/oct4 Complete Larimichthys crocea [107, 109, 156, 167, 168]
m.15308 1284 wt1 Complete Maylandia zebra [115, 116]
m.155583, m.127269 1314 dead end Complete T. orientalis [15, 107, 139]
m.162404 1935 vasa Complete T. orientalis [140, 150152]
  1. aORFs were annotated by the NCBI non-redundant (nr) protein database, with an e-value <1×10−3. Gene full names and details are provided in sections ‘Germ cell-specific genes’, ‘Germ cell-specific genes’ and ‘Additional annotated germ cell-specific genes’. bORF coding regions (CDs) predicted by TransDecoder from each transcript and considered as complete based on the presence of a starting methionine and an ending stop codon. cStudies indicating germ cell specificity of the gene