Skip to main content

Table 1 Total SNPs and InDels for each Brazilian soybean cultivar

From: Evaluation of genetic variation among Brazilian soybean cultivars through genome resequencing

Type

SNPs

InDels

Non-coding region

Coding region

None

Total

Non-coding region

Coding region

None

Total

Anta 82

848,752

5,231

99,327

953,310

203,207

25,458

1,390

230,055

BR 16

1,267,827

8,302

158,063

1,434,192

300,160

38,513

2,088

340,761

BRS 232

1,166,390

7,772

148,274

1,322,436

275,225

35,666

1,779

312,670

BRS 284

778,152

6,204

100,434

884,790

196,677

25,615

1,584

223,876

BRS 360 RR

1,078,635

7,169

128,689

1,214,493

252,198

32,059

1,731

285,988

BRS 361

1,017,791

5,595

115,310

1,138,696

222,364

27,243

1,354

250,961

BRS Sambaiba

1,318,067

8,113

162,389

1,488,569

311,172

39,236

1,909

352,317

BRS Valiosa RR

1,321,233

7,824

158,653

1,487,710

296,309

38,087

1,812

336,208

BRS/GO 8360

839,016

5,276

102,261

946,553

202,591

26,176

1,377

230,144

BRS/GO 8660

1,373,660

8,511

159,418

1,541,589

299,360

37,447

1,905

338,712

BRS/GO Chapadões

1,296,919

7,775

152,967

1,457,661

304,194

38,021

1,898

344,113

BRSMG 850G RR

1,273,571

7,868

157,019

1,438,458

301,255

38,665

1,891

341,811

BRSMT Pintado

1,326,229

8,574

151,052

1,485,855

299,477

36,717

2,006

338,200

BRSMT Uirapuru

1,376,297

8,346

162,189

1,546,832

314,856

39,732

1,909

356,497

CD 201

1,305,772

8,447

150,706

1,464,925

298,825

37,151

2,023

337,999

Conquista

1,338,601

7,955

159,887

1,506,443

317,096

39,952

1,952

359,000

Doko

1,414,796

9,372

165,725

1,589,893

327,783

40,606

2,221

370,610

Embrapa 48

1,091,441

7,882

136,232

1,235,555

264,083

33,767

1,807

299,657

Emgopa 301

1,208,853

7,825

144,216

1,360,894

281,240

35,661

1,758

318,659

FT Abyara

1,241,667

8,250

153,768

1,403,685

291,494

37,394

1,761

330,649

FT Cristalina

1,341,883

8,165

160,115

1,510,163

312,875

39,400

1,922

354,197

IAC 8

1,279,510

7,546

150,883

1,437,939

295,688

37,126

1,791

334,605

IAS 5

1,162,970

8,576

141,328

1,312,874

275,267

34,213

1,974

311,454

NA 5909 RG

949,130

6,184

108,680

1,063,994

222,730

27,813

1,398

251,941

P98Y11

1,341,733

8,376

156,262

1,506,371

301,238

37,248

1,942

340,428

Paraná

1,168,303

8,209

139,875

1,316,387

283,149

35,058

1,873

320,080

Santa Rosa

1,485,334

9,409

178,350

1,673,093

340,609

42,878

2,177

385,664

VMAX RR

1,008,968

6,154

107,398

1,122,520

231,321

27,871

1,396

260,588

  1. Non-coding regions: corresponding to allelic variations up to 5 kb upstream or downstream of genes and intergenic regions modifications; Coding region: corresponding to UTR regions, exons, introns, and splice site modifications; None: no description available for the region