Towards the bridging of molecular genetics data across Xenopus species

BMC Genomics

Table 1 Summary of the coarse-grained map between 18 XLA9.1 chromosomes (L and S) on 10 XTR9.0 chromosomes. The length units are in blocks. Each block corresponds to a sequence of length 5 Kbp. Xtr (X. tropicalis); Xla (X. laevis); Chr (Chromosome)

Xtr Chr	Xtr blocks length	Xtr blocks aligned	Xtr coverage	Number Xla Chr aligned	Total Xla Chr length	Xla Chr blocks aligned	Xla Chr coverage	Alignment rate	Length rate
1	38980	30325	0.778	2	79980	69269	0.70	1.85	2.05
2	34048	24941	0.733	2	68224	53657	0.66	1.82	2.00
3	27458	21199	0.772	2	52947	47149	0.73	1.82	1.93
4	26703	20991	0.786	2	53082	46342	0.73	1.84	1.99
5	29320	20599	0.703	2	59210	43481	0.62	1.79	2.02
6	27032	19736	0.730	2	56700	42203	0.64	1.83	2.10
7	23449	14512	0.619	2	43314	30723	0.59	1.77	1.85
8	23530	17076	0.726	2	43836	34028	0.64	1.64	1.86
9	16091	11011	0.684	2^a	44503	24682	0.44	1.77	2.77
10	7993	5124	0.641	2^a	44503	10047	0.18	1.57	5.57
Totals	254604	185514	0.73	18	546299	401581	0.74	1.77	2.15

^aIn X. laevis, chromosomes 9 and 10 from X. tropicalis become fused and duplicated. They were named Chr9_10L and Chr9_10S chromosomes in XLA9.1. The same set was aligned to X. tropicalis chromosome 9 and chromosome 10

ISSN: 1471-2164