Fig. 4

Comparison of P-values for DESeq2 tests on differential expression. Scatterplot of P-values for differential expression obtained using DESeq2’s likelihood ratio test (LRT) and Wald test on low-count and high-count transcripts subjected to no filtering (a, d) or to filtering with CPM (c, f) or RP (b, e) methods. Diagonal identity line is indicated in red