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Table 1 Number of transcripts in the dataset

From: Inferential considerations for low-count RNA-seq transcripts: a case study on the dominant prairie grass Andropogon gerardii

  All transcripts High-count transcripts Low-count transcripts
  Total SB-only BB-only Total SB-only BB-only Total SB-only BB-only
No filter 25,582 323 132 831 0 0 14,588 323 132
RP filtering 25,453 323 132 831 0 0 14,588 323 132
CPM filtering 14,848 0 0 828 0 0 4308 0 0
  1. The table contains the number of total transcripts, high-count transcripts and low-count transcripts available for differential expression analyses in the complete dataset (i.e. no data filtering applied) or following data filtering based on a reads-present (RP) criterion or a counts per million (CPM) criterion. Also listed are number of transcripts with expression levels present in sand bluestem and absent in big bluestem (SB-only transcripts), and transcripts with expression levels present in big bluestem and absent in sand bluestem (BB-only transcripts)
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BMC Genomics

ISSN: 1471-2164

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