Table 5 Properties of Fom-5190a effector candidates
Gene | FOXM-5190a_15788 | FOXM-5190a_16235 | FOXM-5190a_16257 | FOXM-5190a_16301 | FOXM-5190a_16306 | FOXM-5190a_16326 | FOXM_5190a-SIX1 | FOXM_5190a-SIX8 | FOXM_5190a-SIX9 | FOXM5190a-SIX13 |
|---|---|---|---|---|---|---|---|---|---|---|
Protein length (aa) | 199 | 264 | 91 | 144 | 131 | 111 | 279 | 141 | 122 | 292 |
Mature protein length (aa) | 186 | 247 | 72 | 128 | 112 | 95 | 263 | 126 | 105 | 276 |
Cysteine count in mature protein | 7 | 8 | 8 | 6 | 10 | 9 | 8 | 2 | 6 | 6 |
% Cysteine (of aa length) | 3.5 | 3 | 8.8 | 4.2 | 8.9 | 8.1 | 2.8 | 1.4 | 5.7 | 2.1 |
Predicted to be secreted by SignalP | Y | Y | Y | Y | Y | Y | Y | Y | Y | Y |
WoLFPsort predicted location | extr | extr | extr | extr | extr | extr | extr | extr | extr | extr, mito |
Phobius predicted signal peptide | Y | Y | Y | Y | Y | Y | Y | Y | Y | Y |
TMHMM predicted transmembrane count | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
Pfam domains | - | - | - | LysM | - | - | - | - | - | - |
Number of aligned RNAseq reads overlapping gene model from combined 2d in planta libraries | 24 | 1039 | 89 | 378 | 10 | 369 | 2546 | 828 | 246 | 440 |
Average depth of RNAseq coverage per base of gene | 4 | 123 | 27 | 88 | 3 | 76 | 354 | 141 | 33 | 61 |
Gene length (bp) | 655 | 844 | 324 | 432 | 458 | 488 | 720 | 587 | 728 | 720 |
Proportion of gene model supported by RNAseq | 0.96 | 1 | 1 | 1 | 0.69 | 1 | 0.99 | 1 | 1 | 1 |
Scaffold | 122 | 322 | 364 | 461 | 485 | 531 | 3157, 696, 1167 | 420 | 270 | 306, 3812 |
Scaffold length (bp) | 28,293 | 2356 | 1489 | 971 | 914 | 815 | 219, 647, 416 | 1129 | 4106 | 3,471, 204 |
Predicted scaffold type | Dispensable | Dispensable | Dispensable | Dispensable | Dispensable | Dispensable | Dispensable | Dispensable | Dispensable | Dispensable |
Orthology | Has orthologs in other ff.spp. | Has orthologs in other ff.spp. | Single ortholog unique to Fom5190a | Has orthologs in other ff.spp. | Has orthologs in other ff.spp. | Has orthologs in other ff.spp. | Has orthologs in other ff.spp. | Has orthologs in other ff.spp. | Has orthologs in other ff.spp. | Has orthologs in other ff.spp. |