Genome-wide association and genomic prediction identifies associated loci and predicts the sensitivity of Tobacco ringspot virus in soybean plant introductions

Table 2 Top-ten SNPs in the genome-wide association study without any peak SNP covariates

SNP (ss_id)	Chromosome	Position	MAF	P-value	R² of Model without SNP	R² of model with SNP	FDR-adjusted P-value
ss715581043	2	12,089,749	0.416	1.68 × 10⁻⁹	0.22	0.26	5.16 × 10⁻⁵
ss715581049	2	12,190,975	0.415	1.23 × 10⁻⁸	0.22	0.26	1.31 × 10⁻⁴
ss715581051	2	12,206,518	0.422	1.28 × 10⁻⁸	0.22	0.26	1.31 × 10⁻⁴
ss715581052	2	12,219,313	0.480	4.60 × 10⁻⁷	0.22	0.25	3.53 × 10⁻³
ss715581033	2	11,974,580	0.493	3.76 × 10⁻⁶	0.22	0.24	2.31 × 10⁻²
ss715581062	2	12,327,212	0.453	4.90 × 10⁻⁶	0.22	0.24	2.43 × 10⁻²
ss715581054	2	12,235,906	0.481	5.54 × 10⁻⁶	0.22	0.24	2.43 × 10⁻²
ss715601789	8	40,952,506	0.473	1.22 × 10⁻⁵	0.22	0.24	4.30 × 10⁻²
ss715581036	2	12,036,555	0.430	1.26 × 10⁻⁵	0.22	0.24	4.30 × 10⁻²
ss715601747	8	40,684,679	0.433	4.07 × 10⁻⁵	0.22	0.24	1.19 × 10⁻¹

ISSN: 1471-2164