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Table 3 Content and type of repeats present in SuSy and AS1 BACs from P. glauca and P. pinaster

From: Establishing gene models from the Pinus pinaster genome using gene capture and BAC sequencing

  Susy P. glauca Susy P. pinaster AS P. glauca AS P. pinaster
GeneBank: KC860252 KP172192 KC860234 KP172187
Total length: 137047 bp 59397 bp 130154 bp 46111 bp
GC level: 38.66 % 39.03 % 38.17 % 34.80 %
  Number of elements/percentage of sequence
Bases masked: 10259 bp (7.49 %) 5173 bp (8.71 %) 7548 bp (5.80 %) 595 bp (1.29 %)
Retroelements 7 (6,78 %) 7 (7,52 %) 9 (4,65 %) 0
LINEs: 0 1 (0,70 %) 2 (0,16 %) 0
L1/CIN4 0 1 (0,70 %) 2 (0,16 %) 0
LTR elements: 7 (6,78 %) 6 (6,82 %) 7 (4,49 %) 0
Ty1/Copia 1 (1,09 %) 1 (0,24 %) 1 (0,55 %) 0
Gypsy/DIRS1 6 (5,60 %) 5 (6,58 %) 6 (3,94 %) 0
DNA transposons 0 0 2 (0,10 %) 0
Simple repeats: 18 (0,67 %) 17 (0,94 %) 18 (0,69 %) 11 (0,98 %)
Low complexity: 1 (0,03 %) 3 (0,25 %) 7 (0,36 %) 2 (0,31 %)