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Table 1 Smokescreen genotyping array content

From: Smokescreen: a targeted genotyping array for addiction research

Category Markersa
1014 addiction-related genes
 Tag SNPs (MAF ≥ 0.05) 255862
 Exonic markers 17632
Genome-wide association markers
 Affymetrix’ Axiom® Biobank GWAS grid 246038
 African (YRI) booster panel 50000
Fine-mapping of smoking related loci
CHRNA5-CHRNA3-CHRNB4 (552 kb LD block) 8913
CYP2A6 (±20 kb) 573
CYP2B6 (±20 kb) 1613
High-value addiction markers
 NeuroSNP Project 4994
 Pharmacogenetics of Nicotine Addiction Treatment (PNAT) SNP panels 2271
 v1.0 Quit Success Score 12058
 Literature search 1329
Comorbidity markers
 Lung Cancer 3091
 Psychiatric disorders 1200
 Tobacco smoke constituent update and metabolic phenotypes 1907
 Pulmonary diseases and traits 7945
 Cardiovascular diseases and traits 2247
General high-value markers
 Pharmacogenomic markers 2030
 NHGRI GWAS Catalog 7612
 eQTLs 9736
 Loss-of-function markers 4680
 Ancestry informative markers (AIMs) 5545
 HLA/KIR 8894
 Mitochondrial 180
Array Total 646247
  1. aMarkers in categories may overlap