Table 2 Reciprocal best blast hit analysis identified 1:1 orthologues between the transcriptomes. The resulting clusters, if they contained a putative effector were subjected to DN/DS analysis to identify any clusters under positive selection (DN/DS >1.0). Those identified as possibly under selection are listed in the table
Putative annotation | Identified by | DN/DS | Cluster number | Species in cluster |
|---|---|---|---|---|
Uncharacterized protein LOC100570454 | Proteomics | 4.17 | 12679 | M. persicae |
Twitchin-like A. pisum | Proteomics | 3.66 | 11555 | M. persicae |
Uncharacterized protein LOC100160301 | Proteomics, Mp15 (Bos et al., [14]) | 3.62 | 11125 | M. persicae |
A-agglutinin anchorage subunit-like A. pisum | Proteomics | 2.93 | 4788 | Myzus |
Carbonic anhydrase 7-like A. pisum | Proteomics | 2.79 | 4096 | Myzus |
Hypothetical protein LOC100574284 | Proteomics | 2.48 | 12749 | M. persicae |
Peroxidase-like, partial A. pisum | Proteomics | 2.32 | 9497 | M. persicae |
Uncharacterized protein LOC100167427 precursor A. pisum | Proteomics, Me10 (Atamian et al., [11]) | 1.90 | 3800 | Myzus, A. pisum, R. padi |
Carbonic anhydrase 7-like A. pisum | Proteomics | 1.43 | 10713 | M. cerasi, A. pisum, R. padi |
Glucose dehydrogenase acceptor-like A. pisum | Proteomics | 1.24 | 12369 | M. persicae |
Hypothetical protein LOC100159010 A. pisum | Proteomics | 1.24 | 14505 | M. persicae, R. padi, A. glycines |
Carbonic anhydrase 7-like A. pisum | Proteomics, Mp50 (Bos et al., [14] | 1.15 | 6 | Myzus, A. pisum, R.padi |
Uncharacterized protein LOC100575478 precursor A. pisum | Mp35 (Bos et al., [14]) | 2.99 | 3804 | Myzus |
ACYPI43360 A. pisum | Mp31 Bos et al., [14] | 2.64 | 1099 | Myzus, A. pism |
Hypothetical protein LOC100167863 A. pisum | MpCOO2 (Bos et al., [14]) | 2.63 | 3810 | Myzus |
Hypothetical protein LOC100569335 A. pisum | Mp6 (Bos et al., [14]) | 1.90 | 1095 | Myzus |
Hypothetical protein LOC100159632 A. pisum | Carolan et al., (2011) | 1.47 | 6601 | M. persicae, R. padi |
Protein takeout-like A. pisum | Mp12 (Bos et al., [14]) | 1.48 | 3497 | M. persicae, A. pisum |
Uncharacterized protein LOC100159485 precursor A. pisum | Mp54 (Bos et al., [14]) | 1.15 | 1096 | Myzus |
Mitochondrial import inner membrane translocase subunit | Carolan et al., [23] | 2.32 | 6744 | M. persicae |
Superoxide dismutase Cu-Zn-like precursor A. pisum | Carolan et al., [23] | 2.02 | 569 | M. persicae, R. padi, A. glycines |
Sarcalumenin-like isoform X1 A. pisum | Carolan et al., [23] | 1.34 | 244 | Myzus, A. pisum, R. padi, A. glycines |
LOC100167075 | Carolan et al., [23] | 1.14 | 536 | Myzus, A. pisum, A. glycines |
Cuticular protein 62 precursor A. pisum | Carolan et al., [23] | 1.13 | 6596 | M. persicae, A. pisum, A. glycines |
LOC100163954 | Carolan et al., [23] | 1.05 | 6586 | M. persicae, A. pisum |
Pioneer | Bioinformatics | 1.83 | 12331 | M. pericae |
LOC100162609 A. pisum | Bioinformatics | 1.83 | 12665 | M. pericae |
LOC100571623 A. pisum | Bioinformatics | 1.78 | 1548 | Myzus, A. pisum |
LIRP-like A. pisum | Bioinformatics | 1.69 | 1457 | Myzus, A. pisum |
ACYPI000490 A. pisum | Bioinformatics | 1.68 | 13765 | M. persicae, A. pisum |
Peroxidase-like | Bioinformatics | 1.67 | 6520 | Myzus, A. pisum |
LOC100570826 A. pisum | Bioinformatics | 1.65 | 9610 | Myzus |
Odorant-binding protein | Bioinformatics | 1.63 | 3530 | Myzus, A. pisum, R. padi |
Cuticle protein | Bioinformatics | 1.63 | 4482 | Myzus, A. pisum |
Zinc finger protein | Bioinformatics | 1.61 | 12433 | M. persicae |
gi|488530945 | Bioinformatics | 1.56 | 5718 | Myzus |
LOC100570068 A. pisum | Bioinformatics | 1.43 | 4578 | Myzus |
Pioneer | Bioinformatics | 1.42 | 6006 | Myzus |
LOC100163563 A. pisum | Bioinformatics | 1.35 | 923 | Myzus, A. pisum |
LOC100162393 A. pisum | Bioinformatics | 1.35 | 245 | Myzus, A. pisum, R. padi |
LOC100169018 A. pisum | Bioinformatics | 1.30 | 4753 | M. persicae |
Pioneers | Bioinformatics | 1.29 | 4395 | Myzus |
LOC100160479 A. pisum | Bioinformatics | 1.24 | 3806 | Myzus, A. pisum |
LOC100167515 A. pisum | Bioinformatics | 1.19 | 983 | Myzus, A. pisum, R. padi, A. glycines |
LOC100167306 A. pisum | Bioinformatics | 1.17 | 5666 | Myzus, R. padi, A. glycines |
ACYPI007464 A. pisum | Bioinformatics | 1.17 | 13983 | Myzus, R. padi, A. glycines |
LOC100168723 A. pisum | Bioinformatics | 1.16 | 1851 | Myzus, A. pisum |
Serine proteinase | Bioinformatics | 1.15 | 937 | M. persicae, R. padi, A. pisum |
LOC100159010 A. pisum | Bioinformatics | 1.14 | 5327 | Myzus, A. pisum |