Table 3 Top differentially methylated genes with 4 or more hypermethylated sites
| Â | Â | Number of hypermethylated sites | Â | Â | Â | Â | Â | |
|---|---|---|---|---|---|---|---|---|
Gene (GB) | Fertilized embryos | Thelytokous embryos | % diff meth/no. of sites | ID | Description | Region of gene containing diff meth sites (bp) | Rank in haploid egg v sperm [33] | |
Fertilized embryos | GB19623 | 10 | 2 | 30.0 | LOC726254 | E3 ubiquitin-protein ligase HECTD1-like | 10,393 | Â |
GB18207 | 7 | Â | 58.9 | LOC551848 | Stan, protocadherin-like wing polarity protein stan-like | 655 | 14 (egg) | |
GB13657 | 7 | Â | 43.3 | LOC410109 | Ubiquitin carboxyl-terminal hydrolase 34-like | 1,038 | Â | |
GB12030 | 7 | Â | 36.8 | Rga | Regulator of gene activity, CCR4-NOT transcription complex subunit 2 | 1,500 | 220 (egg) | |
GB19502 | 7 | 1 | 27.2 | LOC411678 | Serine/threonine-protein kinase LATS1-like | 1,455 | Â | |
GB13625 | 6 | Â | 57.6 | LOC408938 | Sodium/potassium/calcium exchanger-like | 75 | Â | |
GB12133 | 6 | Â | 54.8 | LOC726694 | Uncharacterized LOC726694 | 1,992 | Â | |
GB11408 | 6 | 4 | 5.9 | mask | Multiple ankyrin repeats single KH domain | 12,888 | Â | |
GB13135 | 5 | Â | 65.4 | Rho-1 | Ras-like GTP-binding protein Rho1 | 27 | Â | |
GB15356 | 5 | Â | 54.1 | syd | JNK-interacting protein 3 | 414 | Â | |
GB17138 | 5 | Â | 53.8 | LOC726524 | Chromo domain-helicase-DNA-binding protein 7 | 1,903 | Â | |
GB15737 | 5 | Â | 53.2 | LOC413786 | Similar to netrin 1a | 192 | Â | |
GB17802 | 5 | Â | 46.9 | hyd | E3 ubiquitin-protein ligase hyd | 9,018 | Â | |
GB11916 | 5 | Â | 45.0 | LOC411894 | Dynein beta chain, ciliary-like | 89 | Â | |
GB15553 | 5 | Â | 44.8 | LOC551066 | Female sterile (1) K10 ortholog | 2,519 | Â | |
GB18689 | 5 | Â | 43.9 | LOC413663 | Myotubularin-related protein 4-like | 317 | Â | |
GB16783 | 5 | 2 | 18.6 | Arp5 | Actin-related protein 5 | 366 | Â | |
GB18386 | 5 | 2 | 14.1 | Sap30 | SAP30-binding protein-like | 952 | 2 (egg) | |
GB13213 | 4 | Â | 60.2 | Eif4g | Eukaryotic translation initiation factor 4 gamma | 2735 | Â | |
GB15134 | 4 | Â | 60.0 | LOC413618 | Polyadenylation factor subunit 2 | 3,855 | Â | |
GB14328 | 4 | Â | 60.0 | LOC408308 | Coiled-coil-helix-coiled-coil-helix domain-containing protein 2, mitochondrial-like | 29 | Â | |
GB16657 | 4 | Â | 53.8 | Pcl | Polycomblike | 1,365 | Â | |
GB17954 | 4 | Â | 53.2 | Spt5 | Transcription elongation factor SPT5 | 1,608 | 183 (egg) | |
GB16844 | 4 | Â | 48.6 | EF1a-F2 | Elongation factor 1-alpha F2 | 680 | Â | |
GB14570 | 4 | Â | 46.2 | LOC551973 | Cleavage and polyadenylation specificity factor subunit CG7185 ortholog | 3,366 | Â | |
GB15773 | 4 | 1 | 45.6 | LOC411939 | Protein RIC1 homolog | 3,465 | Â | |
GB18802 | 4 | Â | 45.2 | LOC409151 | Uncharacterized LOC409151 | 1,307 | Â | |
GB17582 | 4 | Â | 43.8 | LOC411099 | Zinc finger protein 84-like | 1,739 | Â | |
GB17165 | 4 | Â | 41.2 | stnB | Stoned B | 244 | 1 (egg) | |
GB12228 | 4 | Â | 41.1 | LOC726280 | Uncharacterized LOC726280 | 3,048 | Â | |
GB12280 | 4 | 1 | 39.0 | spas | Spastin | 9,053 | Â | |
GB18988 | 4 | 1 | 31.2 | CNOT1 | CCR4-NOT transcription complex, subunit 1 | 1,916 | Â | |
GB10249 | 4 | 1 | 28.5 | LOC551947 | Poly(ADP-ribose) glycohydrolase | 8,551 | Â | |
GB17400 | 4 | 1 | 24.7 | LOC726618 | Similar to Alhambra CG1070-PD | 4,400 | Â | |
GB10983 | 4 | 2 | 19.0 | LOC411219 | Metastasis suppressor protein 1 | 1,365 | 173 (egg) | |
GB15909 | 4 | 1 | 12.0 | ewg | DNA-binding protein Ewg | 3,230 | Â | |
GB12244 | 4 | 3 | 8.9 | LOC725706 | rna-binding protein pno1-like | 7,437 | 208 (egg) | |
Thelytokous embryos | GB15671 |  | 4 | −61.7 | LOC409309 | E3 ubiquitin-protein ligase UBR4-like, purity of essence-like | 1,728 | 221 (egg) |
GB14218 |  | 4 | −57.7 | LOC410796 | PHD finger protein 2-like, JmjC domain-containing histone demethylation protein 1D/E/F | 2,945 |  | |
GB14495 |  | 4 | −44.5 | LOC408497 | Uncharacterized LOC408497, SAP domain | 1,413 |  | |
GB10959 |  | 4 | −36.8 | LOC727029 | 26S proteasome non-ATPase regulatory subunit 1-like | 1,007 |  | |
GB10818 |  | 4 | −25.4 | LOC100577325 | Uncharacterized LOC100577325 | 51 |  | |