Table 1 Assembly statistics of H. indica transcriptome generated by Velvet and Oases
Assembly statistics of H. indica transcriptome generated by velvet | ||||
|---|---|---|---|---|
 k-mer length | 71 | 75 | 79 | 83 |
 No. of contig | 22,698 | 21,760 | 20,363 | 18,710 |
 Min contig length (bp) | 200 | 200 | 200 | 200 |
 Max contig length (bp) | 12,876 | 11,783 | 10,340 | 10,673 |
 N50 (bp) | 810 | 828 | 872 | 909 |
Assembly statistics of H. indica transcriptome generated by Oases | ||||
Parameters | Reading | |||
 No. of transcripts | 23,827 | |||
 Total assembly (Mb) | 22 | |||
 Min transcript length (bp) | 102 | |||
 Max transcript length (bp) | 12,876 | |||
 N50 | 1,292 | |||
Final assembly statistics of the H. indica transcriptome after Velvet-Oases pipeline, cd-hit-est and filtering for <300Â bp reads | ||||
Parameters | Reading | |||
 No. of unique transcripts | 13,593 | |||
 Total assembly (Mb) | 15 | |||
 min transcript length (bp) | 300 | |||
 Max transcript length (bp) | 12,876 | |||
 N50 | 1,371 | |||