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Table 1 Assembly statistics of H. indica transcriptome generated by Velvet and Oases

From: A transcriptomic insight into the infective juvenile stage of the insect parasitic nematode, Heterorhabditis indica

Assembly statistics of H. indica transcriptome generated by velvet
 k-mer length 71 75 79 83
 No. of contig 22,698 21,760 20,363 18,710
 Min contig length (bp) 200 200 200 200
 Max contig length (bp) 12,876 11,783 10,340 10,673
 N50 (bp) 810 828 872 909
Assembly statistics of H. indica transcriptome generated by Oases
Parameters Reading
 No. of transcripts 23,827
 Total assembly (Mb) 22
 Min transcript length (bp) 102
 Max transcript length (bp) 12,876
 N50 1,292
Final assembly statistics of the H. indica transcriptome after Velvet-Oases pipeline, cd-hit-est and filtering for <300 bp reads
Parameters Reading
 No. of unique transcripts 13,593
 Total assembly (Mb) 15
 min transcript length (bp) 300
 Max transcript length (bp) 12,876
 N50 1,371