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Table 3 Genomic regions associated with the saturated fatty acids profile in intramuscular fat of the Longissimus thoracis muscle of Nellore

From: Genome-wide association between single nucleotide polymorphisms with beef fatty acid profile in Nellore cattle using the single step procedure

Traits

QTL window

% Variance explained SNP window a

PCGb

Total of SFA

1:113607033-113638343

1.29

-c

4:8338571-8365876

6.64

CDK14

5:115737350-115767786

2.59

-

23:51299188-51326222

3.71

GMDS

C12:0

7:10826539-10852759

1.25

-

16:20584009-20601201

1.46

ESRRG

29:35323539-35335022

1.02

-

C14:0

1:71431023-71499402

2.52

SLC51A PCYT1A TCTEX1D2

1:109079423-112985104

1.43

PLCH1

2:12006597-12035487

2.84

-

2:95199347-95226934

2.84

ADAM23

2:108339996-108355638

3.93

-

8:4017767-4040618

1.61

GALNTL6

9:5964257-5996599

1.34

-

9:75828407-75861439

1.34

PEX7

12:1848851-1867387

1.23

-

17:33139235-33161695

1.38

-

29:14239868-14284421

1.25

-

C16:0

1:71431023-71499402

2.48

SLC51A PCYT1A TCTEX1D2

2:12009907-12039794

1.95

-

3:6449321-7462185

1.63

UAP UHMK1 HSD17B7

4:27962298-27989717

1.76

-

8: 4017767-4040618

2.47

GALNTL6

9:7517866-7545663

1.73

BAI3

12:21267027-22190566

2.90

ATP7B DHRS12

20:1657499-1668052

1.80

FAM196B DOCK2

C18:0

1:96012245-96039235

6.14

FNDC3B

2:125065946-125101312

1.45

EPB41

3:115395556-115435819

8.33

-

8:100281732-100312597

3.90

TMEM245 MIR32

17:66287675-66303849

1.45

SVOP

  1. aWindow that consists of continuous 10 SNPs
  2. bPositional/putative candidate gene
  3. cNo PCG associated with the trait