Table 3 Results of the blastx comparisons between contigs from the grapevine phylloxera transcriptome and proteins from the nr bank, ordered by the number of contigs which have a given species as best hit. In some cases, species of a same genus (e.g. Drosophila) or of a same higher order taxonomical group (e.g. all sequences from true aphids – Aphidoidea - except the pea aphid: Aphis sp., Myzus persicae, Rhopalosiphum sp., Toxoptera citricida) were binned
best hit species | Group | # contigs | Mean % identity |
|---|---|---|---|
Acyrthosiphon pisum | Insect (Hemiptera) | 11534 | 66.7 |
Tribolium castaneum | Insect (Coleoptera) | 536 | 43.1 |
Camponotus floridanus | Insect (Hymenoptera) | 209 | 51.4 |
Drosophila sp. | Insect (Diptera) | 158 | 45.9 |
Hydra magnipapillata | Cnidaria | 147 | 49.4 |
Propionibacterium acnes | Bacteria | 135 | 97.1 |
Danaus plexippus | Insect (Lepidoptera) | 109 | 44.8 |
Acromyrmex echinatior | Insect (Hymenoptera) | 106 | 53.2 |
Pediculus humanus corporis | Insect (Phtyraptera) | 100 | 51.2 |
Strongylocentrotus purpuratus | Echinodermata | 93 | 45.2 |
Megachile rotundata | Insect (Hymenoptera) | 82 | 48.1 |
Harpegnathos saltator | Insect (Hymenoptera) | 77 | 49.2 |
Bombyx mori | Insect (Diptera) | 75 | 43.7 |
Metaseiulus occidentalis | Insect (Hymenoptera) | 70 | 48.3 |
Malus sp. | Plant | 66 | 46.3 |
Nasonia vitripennis | Insect (Hymenoptera) | 64 | 51.3 |
other aphid species | Insect (Hemiptera) | 58 | 71.6 |
Aedes aegypti | Insect (Diptera) | 50 | 43.5 |
Ostreococcus lucimarinus CCE9901 | Plant | 49 | 55.7 |
Grapevine rupestris stem virus | Plant virus | 49 | 96.3 |
Vitis sp. | Plant | 26 | 91.2 |