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Fig. 3 | BMC Genomics

Fig. 3

From: A novel method of transcriptome interpretation reveals a quantitative suppressive effect on tomato immune signaling by two domains in a single pathogen effector protein

Fig. 3

The C-terminal domain regulates a subset of the genes regulated by the core domain. a Venn diagram showing the number of genes that are significantly down-regulated, relative to D29E expressing the CD−/CTD−, by D29E expressing AvrPto (WT), AvrPto(2xA) (CD), or AvrPto(I96A) (CTD). b Venn diagram including the number of genes that are significantly up-regulated. c The top five defense-related gene ontology (GO) terms called from the set of genes down-regulated by AvrPto relative to the CD−/CTD−, calculated using the ‘GO term enrichment analysis’ tool with the False Discovery Rate metric [59]. Shown are the percentages of genes belonging to each GO term out of the total genes in that set for those significantly down-regulated by the each domain or the WT. Adjusted p-values for all GO terms shown are below 0.05 for all treatments

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BMC Genomics

ISSN: 1471-2164

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