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Table 2 Breast: Distribution of SNVs by Region

From: Multivariate models from RNA-Seq SNVs yield candidate molecular targets for biomarker discovery: SNV-DA

Region

Total set

Filtered set

intronic

93,860

12,378

3’ UTR

33,800

9,034

exonic

31,235

6,195

nonsynonymous exonic

12,598

2,484

intergenic

26,764

2,341

ncRNA

10,767

1,767

up/downstream

3,189

491

5’ UTR

2,148

419

RNA-editing

1,902

215

All SNVs

213,020

31,788

  1. The distribution of called SNVs by region of origin in the breast cancer dataset. A filtered set is created by only including SNVs that have at least six samples with non-zero allele fractions
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BMC Genomics

ISSN: 1471-2164

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