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Table 1 Overview of transcriptome sequencing and de novo assembl results

From: De novo analysis of transcriptome reveals genes associated with leaf abscission in sugarcane (Saccharum officinarum L.)

  B1 B2 Q1 Q2 T1 T2
Raw reads 83,879,424 92,222,556 89,370,426 89,370,426 85,447,812 88,421,042
Q20 percentage 97.96 % 97.58 % 97.77 % 97.66 % 97.94 % 97.86 %
Clean reads 76,869,838 83,161,522 81,439,136 77,208,082 78,574,934 80,853,072
Total reads 478,106,584
Total trinity ‘genes’ 164,803
Total trinity transcripts 275,018
Percent GC 48.23 %
ContigN10 3,155
ContigN50 1,177
Total assembled bases 215,019,578