Table 1 Overview of transcriptome sequencing and de novo assembl results
| Â | B1 | B2 | Q1 | Q2 | T1 | T2 |
|---|---|---|---|---|---|---|
Raw reads | 83,879,424 | 92,222,556 | 89,370,426 | 89,370,426 | 85,447,812 | 88,421,042 |
Q20 percentage | 97.96Â % | 97.58Â % | 97.77Â % | 97.66Â % | 97.94Â % | 97.86Â % |
Clean reads | 76,869,838 | 83,161,522 | 81,439,136 | 77,208,082 | 78,574,934 | 80,853,072 |
Total reads | 478,106,584 | |||||
Total trinity ‘genes’ | 164,803 | |||||
Total trinity transcripts | 275,018 | |||||
Percent GC | 48.23Â % | |||||
ContigN10 | 3,155 | |||||
ContigN50 | 1,177 | |||||
Total assembled bases | 215,019,578 | |||||