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Table 3 QTL identified for PH, EH, and IN using high-density bin map

From: Genetic dissection of maize plant architecture with an ultra-high density bin map based on recombinant inbred lines

Trait Namea Nameb Effectc Chr.d Flanking markere Intervalf (Mb) Physical lengthg (Mb) LODh PVEi ADDj
PH qPH1-1 E1,E2 1 mk328–mk336 161.10–169.60 8.5 6.42 7.44 10.49
qPH1-2 E3 1 mk271–mk280 91.00–98.40 6.3 10.63 12.01 13.98
qPH2 E1,E2,E3 2 mk926–mk950 193.10–201.40 8.3 5.31 5.91 9.22
qPH4 E3 4 mk1569–mk1610 3.20–16.20 13.35 8.95 2.6 6.51
qPH5-1 E2 5 mk2112–mk2119 22.70–29.10 5.75 7.4 4.13 8.64
qPH5-2 E3 5 mk2312–mk2433 175.20–207.50 32.05 3.53 4.23 8.32
qPH8 E1,E2 8 mk3521–mk3550 166.00–170.20 4.2 3.58 3.81 −7.09
qPH10 E1,E2,E3 10 mk4016–mk4026 81.30–85.10 3.8 9.09 9.35 11.93
EH qEH1-1 E1,E2 1 mk271–mk280 91.00–98.40 6.3 8.72 9.96 7.16
qEH1-2 E3 1 mk309–mk314 146.50–154.90 6.85 14.63 15.68 8.75
qEH3 E2,E3 3 mk1278–mk1284 138.70–145.30 5.9 3.68 3.43 −4.58
qEH5 E3 5 mk2302–mk2320 172.90–178.60 5.45 3.98 3.9 4.28
qEH6-1 E2 6 mk2598–mk2610 95.30–101.10 5.45 4.62 4.78 5.75
qEH6-2 E3 6 mk2541–mk2549 60.90–72.20 7.4 4.23 4.16 4.59
qEH7 E1 7 mk3037–mk3044 133.00–137.60 4.25 6.15 6.26 4.73
qEH8-1 E2 8 mk3401–mk3531 120.30–167.40 46.9 3.68 3.92 −5.17
qEH10 E1,E2,E3 10 mk4012–mk4037 80.10–94.70 14.6 9.99 9.9 7.14
IN qIN1 E2 1 mk271–mk295 91.00–111.70 19.4 6.26 6.48 0.61
qIN3 E1 3 mk1339–mk1357 167.60–173.00 5.25 6.54 8.11 −0.52
qIN8-1 E1,E2 8 mk3405–mk3412 121.90–127.40 5.5 13.08 15.53 −0.83
qIN8-2 E3 8 mk3371–mk3382 106.30–112.50 5.9 12.5 18.73 −0.91
qIN10 E2,E3 10 mk4016–mk4036 81.30–94.20 12.9 11.11 13.66 0.84
  1. aTrait is the name of the component of plant architecture: PH plant height, EH ear height, IN internode number
  2. bThe name of each QTL is a composite of the influenced trait: PH, EH, IN
  3. cThe effect of each QTL in a specific environment: E1 is 2013 Shunyi; E2 is 2013 Gongzhuling; and E3 2014 is Gongzhuling
  4. dChr., chromosome
  5. eFlanking markers, the markers to the left and right of the QTL
  6. fInterval, confidence interval between two bin markers
  7. gPhysical length, interval between the two markers on the B73 genome
  8. hLOD, the logarithm of odds score
  9. iPVE, the phenotypic variance explained by individual QTL
  10. jADD, the additive effect value. The LOD scores, PVE values, and ADD values are shown as mean values for QTL with multiple effects