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Table 5 Potentially Light Regulated TFs and TRs in ChlamyNET. Their potential Arabidopsis ortholog and topological indexes are indicated as well

From: ChlamyNET: a Chlamydomonas gene co-expression network reveals global properties of the transcriptome and the early setup of key co-expression patterns in the green lineage

Chlamydomonas gene

Putative Arabidopsis Ortholog

Number of neighbours

Normalized hub score

Clustering

coefficient

Cre06.g295200 CPH1 / CrCRYl

At4g08920 CRYPTOCHROME 1

57

8.12 x 10-5

0.39

Cre01.g043150 CrGBF1

At4g36730 G-BOX BINDING FACTOR 1

182

7.36 x 10-7

0.31

Cre12.g510200

CrHY5

At5g11260 ELONGATED HYPOCOTYL 5

133

0.32

0.47

Cre06.g310500

CrHYH

At3g17609 HY5-HOMOLOG

39

0.12

0.71

Cre12.g521150

CrDOF

At5g39660 CYCLING DOF FACTOR 2

27

3.79 x 10-8

0.34

g6302

CrCO

At5g15840 CONSTANS

58

2.29 x 10-4

0.40

Cre02.g094150

CrPRR9

At2g46790 PSEUDO-RESPONSE REGULATOR 9

1

7.72 x 10-7

0

Cre06.g275350

CrLHY

At1g01060 LATE ELONGATED HYPOCOTYL

78

5.86 x 10-7

0.38

g1542

CrLUX

At3g46640 LUX

38

2.23 x 10-7

0.40

Cre06.g277350

CrHD1

At4g38130 HISTONE DEACETYLASE 1

1

5.12 x 10-18

0

g16739

CrTOC1

At5g61380 TIMING OF CAB EXPRESSION 1

3

1.49 x 10-5

0.33

Cre14.g617350

CrUVR8

At5g63860 UVB-RESISTANCE 8

1

4.09 x 10-14

0

Cre05.g234300

CrCOP11

At3g61140 CONSTITUTIVE PHOTOMORPHOGENIC 11

36

7.81 x 10-14

0.37

Cre14.g608850

CrCOP9

At4g14110 CONSTITUTIVE PHOTOMORPHOGENIC 9

11

1.26 x 10-12

0.27

Cre17.g708300

CrRPN12A

At1g64520 REGULATORY PARTICLE NON-ATPASE 12A

57

7.44 x 10-14

0.39

Cre10.g439150

CrRPT5A

At3g05530 REGULATORY PARTICLE TRIPLE-A ATPASE 5A

51

7.49 x 10-14

0.45

Cre13.g581450

CrRPN7

At4g24820 REGULATORY PARTICLE NON-ATPASE 7

59

1.52 x 10-13

0.28

Cre06.g275650

CrRPN3A

At1g20200 REGULATORY PARTICLE NON-ATPASE 3A

14

2.80 x 10-15

0.41

Cre16.g663500

CrRPN10

At4g38630 REGULATORY PARTICLE NON-ATPASE 10

4

3.48 x 10-14

0

Cre04.g216600

CrRPT6A

At5g19990 REGULATORY PARTICLE TRIPLE-A ATPASE 6A

19

1.74 x 10-12

0.25

Cre07.g329700

CrRPT2A

At4g29040 REGULATORY PARTICLE TRIPLE-A ATPASE 2A

3

3.44 x 10-16

0.33

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BMC Genomics

ISSN: 1471-2164

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