Table 3 Differentially methylated 3Kb regions between Holstein and Angus cultures as determined by MIRA-Seq and gene expression data for annotated genes

−2.9

1

8811701–8814700

ADAMTS5

- -

- -

- -

4.2

1

4686501–4689500

LOC100848874

- -

- -

- -

2.0

1

8325701–8328700

LOC526789

- -

- -

- -

−3.4

2

88463334–88466333

- -

- -

- -

- -

−3.4

2

88469334–88472333

- -

- -

- -

- -

2.6

2

18491734–18494733

OSBPL6

- -

1.4

1.5

2.0

5

116626706–116629705

FBLN1

- -

- -

- -

2.3

6

5529182–5532181

- - -

- -

- -

- -

−8.3

7

18532846–18535845

LOC100337044

- -

- -

- -

2.9

8

23178787–23181786

LOC100300143

- -

- -

- -

−2.6

8

34929387–34932386

- -

- -

- -

- -

−2.7

8

78669587–78672586

- -

- -

- -

- -

−2.8

8

12568687–12571686

- -

- -

- -

- -

−4.0

8

79335787–79338786

NTRK2

- -

- -

- -

−2.6

8

98801087–98804086

- -

- -

- -

- -

−2.6

9

20444051–20447050

- -

- -

- -

- -

−2.7

9

93571151–93574150

- -

- -

- -

- -

−4.0

9

88292251–88295250

ULBP1

- -

- -

- -

−2.7

10

32127701–32130700

- -

- -

- -

- -

2.1

12

51081922–51084921

- -

- -

- -

- -

−2.5

13

64236797–64239796

ASIP

−14.0

−15.2

−13.4

2.8

13

48576797–48579796

LRRN4

- -

- -

- -

2.6

14

36500947–36503946

- - -

- -

- -

- -

2.1

15

53581057–53584156

LOC100336675

- -

- -

- -

−2.3

15

9012857–9015856

- -

- -

- -

- -

−7.5

15

27535857–27538856

- -

- -

- -

- -

−2.8

15

55516557–55519556

SERPINH1

- -

- -

- -

−2.4

17

7224294–7227293

MAB21L2

- -

- -

- -

2.2

17

17977294–17980293

MAML3

- -

- -

- -

−2.8

18

60220698–60223697

LOC100848332

- -

- -

- -

−3.6

18

63217498–63220497

LOC783134

- -

- -

- -

3.4

18

33452798–33455797

- -

- -

- -

- -

2.4

19

42556475–42559474

- -

- -

- -

- -

2.3

19

62858675–62861674

AXIN2

- -

- -

- -

−2.4

19

43381475–43384474

CNTNAP1

- -

1.8

2.0

−3.6

19

23655275–23658274

HIC1

- -

1.7

- -

2.2

19

42109475–42112474

KRTAP9-2

- -

- -

- -

2.4

19

62705675–62708674

RGS9

2.0

2.1

2.5

4.8

23

49777993–49780992

- - -

- - -

- - -

- - -

2.8

24

59112931–59115930

CCBE1

−2.3

−2.2

−1.8

2.4

24

62388931–62391930

- - -

- - -

- - -

- - -

2.5

25

27266601–27269600

- - -

- - -

- - -

- - -

2.4

26

23658031–23661030

C26H10orf26

- - -

- - -

1.4

−2.4

26

16776031–16779030

LOC100848660

- - -

- - -

- - -

3.2

27

23720367–23723366

- - -

- - -

- - -

- - -

−2.4

X

63726195–63729194

LOC100848206

2.4

2.6

2.3

2.1

X

111529495–111532494

LOC516666

- - -

- - -

- - -

2.1

X

128195395–128198394

- - -

- - -

- - -

- - -

−2.6

X

55935095–55938094

- - -

- - -

- - -

- - -