Genome-wide identification and functional prediction of novel and fungi-responsive lincRNAs in Triticum aestivum

Table 2 Putative sm-sites of DE-lincRNAs in wheat responding to stripe rust and powdery mildew

Sequences	Fungi	Sequences	Fungi	Sequences	Fungi
gauuuuga	+	aguuuugg	P	aauuuuuag	P
aauuuugg	P	gguuuuaa	−	aguuuuuga	P
*aguuuuag	P	gauuuuaa	+	gauuuugg	+
*aauuuuaa	−	gguuuuuuga	P	gauuuuuuag	P
gguuuuuga	P	gauuuuag	−	aauuuuuuuga	P
aauuuuag	±	gauuuuugg	P	aguuuuga	−
aguuuuaa	−	aguuuuuuuuuuag	P	aauuuuuga	P
gauuuuuga	P	gguuuuuag	P	gguuuugg	P
gguuuuuuuuuuugg	+	gauuuuuuuuuaa	P	gauuuuuugg	P
gauuuuuaa	S	aauuuuuugg	P	gauuuuuag	P
*aauuuuga	±	aauuuuuuugg	−	gguuuuag	−
gguuuuga	−	aguuuuugg	P	aauuuuuuuuag	S
aguuuuuag	±	aguuuuuuuuuaa	P	aguuuuuaa	P
aauuuuugg	−	aauuuuuaa	P	gauuuuuuuaa	P
gguuuuuuaa	P	aguuuuuugg	P	gguuuuuaa	P
aauuuuuuaa	P	gauuuuuuaa	P

The sm-site were predicted with RNA Analyzer online. P means that the motif harbored in the DE-lincRNA induced by powdery mildew. S means that the motif was harbored by the DE-lincRNA induced by stripe rust. “+” means that the DE-lincRNA carrying the corresponding motif was induced by both fungi. “−”means the motif was carried by several DE-lincRNAs but the latter were specific induced by stripe rust and powdery mildew respectively. The high frequent motifs were marked with star

ISSN: 1471-2164