Skip to main content

Table 1 Overview of the sequencing and assembly

From: Molecular mechanism of ethylene stimulation of latex yield in rubber tree (Hevea brasiliensis) revealed by de novo sequencing and transcriptome analysis

  C E-8 E-24 Total
Total Raw Reads 55,532,586 54,200,296 54,549,846  
Total Clean Reads 53,177,976 51,965,770 52,303,714  
Total Clean Nucleotides (nt) 4,786,017,840 4,676,919,300 4,707,334,260  
Q20 percentage 98.24 % 98.30 % 98.30 %  
N percentage 0.00 % 0.00 % 0.00 %  
GC percentage 43.33 % 43.48 % 43.31 %  
Contig
Total Number 139,806 140,407 138,182  
Total Length (nt) 49,459,322 49,507,343 49,415,302  
Mean Length (nt) 354 353 358  
N50 667 659 683  
Unigene
Total Number 80,800 81,335 80,048 84,425
Total Length (nt) 65,946,686 65,357,057 65,398,163 92,963,404
Mean Length (nt) 816 804 817 1101
N50 1,652 1,640 1,673 1,875
Total Consensus Sequences 80,800 81,335 80,048 84,425
Distinct Clusters 30,702 29,583 30,307 40,642
Distinct Singletons 50,098 51,752 49,741 43,783