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Table 2 Functional categories of up-regulated genes

From: A subtracted cDNA library identifies genes up-regulated during PHOT1-mediated early step of de-etiolation in tomato (Solanum lycopersicum L.)

BIN categories

Number of sequences

Photosynthesis

1

Minor carbohydrates

3

Glycolysis

1

Fermentation

1

Mitochondrial electron transport/ATP synthesis

4

Cell wall

7

Lipid metabolism

3

Amino acid metabolism

7

Stress

11

Redox

2

Miscellaneous enzyme families

4

RNA: processing, transcription, regulation of transcription

12

DNA: synthesis/chromatin structure, repair

4

Protein: synthesis, targeting, postranslation modification, degradation

33

Signalling

8

Cell organisation

3

Cell cycle

1

Cell, vesicle transport

2

Development

5

Transport

12

No ontology

8

Unknown

19