Table 1 Comparison between mInDel with other InDel calling tools
From: mInDel: a high-throughput and efficient pipeline for genome-wide InDel marker development
Method | mInDel | SAMtools | GATK | Atlas2 |
|---|---|---|---|---|
De novo assembly | Yes | No | No | No |
Reference genome-independent | Yes | No | No | No |
Different aligners for different read lengths | Yes | No | No | No |
InDel sized called | Short, Long | Short | Short | Short |
High-throughput genotyping compatibility | Yes | Yes | Yes | Yes |
PCR/electrophoresis genotyping amiability | High | Low | Low | Low |