TNL genes in peach: insights into the post-LRR domain

BMC Genomics

Table 1 TIR, NB, NLL, LRR, and PL motifs detected from TNLs within the peach genome and from reference TNL genes

TNL sequence numbers	Motif	Signature	MEME motif (consensus sequence)	E-value	Sequences displaying the motif	Similar to (Meyers et al.) [3]	Similar to (Jupe et al.) [39]
	TIR1	VFLSFRGxDTRxxFxxHL	YDVFLSFRGEDTRKGFTDHLYHALXXKGI	3.6e-2895	98 %	TIR-1	motif 18
	TIR2	DDxxLxRG	TFRDDDELERG	2.9e-634	95 %
146	TIR3	YAxSxWCLDEL	YSPELLKAIEESRISIIVFSKNYASSTWCLDELVKIL	3.0e-3730	99 %	TIR-2	motif 15
	TIR4	PxFYxVDPSxVRxQ	VLPIFYDVDPSDVRKQTGSFA	1.2e-2248	99 %	TIR-3	motif 13
	TIR5	KVxxWRxAL	DKEKVLRWRAALTEVANLSGW	2.9e-1463	92 %
	NB1	GIWGMGGIGKTT	RMVGIWGMGGIGKTTIAKAVYNSISHKFE	8.3e-2337	100 %	P-loop	motif 1
	NB2	GSRIIITT	GKDWFGPGSRIIITTRDKHLL	9.0e-1589	100 %	RNBS-B	motif 5
120	NB3	GLPLAL	YLELSKRVVDYAGGLPLALKVLGSSLYGR	8.1e-1978	100 %	GLPL	motif 3
	NB4	FLDIACF	LDDMEKEIFLDIACFFKGK	2.7e-1129	92 %	RNBS-D	-
	NB5	MHDL	NKLWMHDLLQEMGREIVREE	1.9e-1115	92 %	MHDV	motif 7
	NLL1	FxxMxxLxxL	EAFSKMKNLRLLILSNV	5.8e-1047	95 %	-	-
146	NLL2	LxxLxWxxxPLxxLP	LRWLCWSGYPLKSLP	2.2e-1037	95 %	-	-
	NLL3	FxPxxLxxLxxMxxS	SNFQPEKLVELNMPYSKLRQL	2.6e-1017	95 %	-	-
	LRR1a	PDFxxxPNLxxLxLxxCxxL	TKTPDFSGIPNLERLNLEGCTSLVEVHPSI	2.8e-1638	91 %	-	-
	LRR1b	LxxLxxLxLxGCxxLxxLP	LKSLETLILSGCSKLEKLPEI	1.1e-789	91 %	-	-
118	LRR2a	LxxLxLxGTxIxxLPxSI	MESLKELDLSGTAIRELPSSI	4.0e-767	92 %	-	-
	LRR2b	LxxCxxLxxLPxxI	NLKDCKNLLKSLPSSI	2.4e-461	90 %	-	-
	PL-1	IPxWF	PGSEIPEWFSHQSVGD	1.0e-643	95 %	-	-
124	PL-2	GxAxCxV	KWMGLALCAVFE	3.2e-386	89 %	-	-
	PL-3	VKKCGxxL	VKKCGVRLVYEQDVEELNQT	9.0e-704	83 %	-	-

Numbers of domain sequences used to detect the motifs are indicated in the left column. Each motif is characterised by its specific signature, its MEME consensus sequence, its e-value and the percentage of sequences displaying it. Some motifs from TIR and NB domains correspond to those described in the literature. Motifs are reported in sequence order

ISSN: 1471-2164