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Table 1 Recombination detected in the core genome of Erysipelothrix rhusiopathiae

From: Genomic analysis of the multi-host pathogen Erysipelothrix rhusiopathiae reveals extensive recombination as well as the existence of three generalist clades with wide geographic distribution

  Clade 1 Clade 2 Clade 3
% of alignment implicated BNG 0 38 24
% of alignment implicated Gubbins 27 86 58
r/m 0.96 2.18 0.55
  1. Percentage of the Erysipelothrix rhusiopathiae core genome found to have experienced recombination within each clade using BratNextGen (BNG) and Gubbins. Recombination to mutation (r/m) rates for each clade were estimated in Gubbins