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Table 4 Mean (standard deviation) of source samples for AIMs typed with the 3 sets of informative markers

From: Selecting SNPs informative for African, American Indian and European Ancestry: application to the Family Investigation of Nephropathy and Diabetes (FIND)

SNPs in estimates

Source samples for AIMs

HapMap CEU, N = 165

HapMap LWK, N = 110

HapMap YRI, N = 193

Pima, N = 964

EU

AI

AF

EU

AI

AF

EU

AI

AF

EU

AI

AF

|PEU-PAI| N = 450

.988 (.022)

.004 (.010)

.008 (.021)

.163 (.182)

.144 (.180)

.693 (.359)

.133 (.175)

.152 (.178)

.715 (.349)

.004 (.029)

.985 (.065)

.011 (.053)

|PEU-PAF| N = 450

.986 (.023)

.010 (.022)

.004 (.010)

.010 (.015)

.017 (.030)

.972 (.028)

.001 (.003)

.004 (.012)

.995 (.012)

.143 (.169)

.715 (.325)

.142 (.164)

|PAI-PAF| N = 400

.656 (.403)

.185 (.221)

.159 (.186)

.012 (.022)

.008 (.015)

.980 (.023)

.004 (.016)

.002 (.006)

.994 (.017)

.009 (.049)

.988 (.055)

.003 (.017)

All SNPs N = 1300

.990 (.014)

.005 (.010)

.005 (.010)

.015 (.015)

.007 (.011

.978 (.016)

.001 (.004)

.002 (.007)

.996 (.008)

.007 (.039)

.989 (.048)

.003 (.021)

  1. Each set is maximized for information in one contrast, and with all combined SNPs
  2. EU European ancestry, AI American Indian ancestry, AF African ancestry
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BMC Genomics

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