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Table 5 Single sequence repeat (SSR) statistics according to the type of motif, the percentage of each motif and the amount of unigenes with SSRs. Complete information about these markers is shown in Additional file 10

From: The first de novo transcriptome of pepino (Solanum muricatum): assembly, comprehensive analysis and comparison with the closely related species S. caripense, potato and tomato

Di-nucleotide motif

Number of Di-SSR

%

Unigenes

 AG

123

48.62

 

 AT

101

39.92

 

 AC

29

11.46

 

 Total

253

100

253

Tri-nucleotide motif

Number of Tri-SSR

%

Unigenes

 AAG

191

27.02

 

 AAC

103

14.57

 

 AAT

101

14.29

 

 ATC

93

13.15

 

 ACC

68

9.61

 

 AGG

56

7.92

 

 AGC

50

7.07

 

 ACT, ACG, CCG

45

6.36

 

 Total

707

100

684

Tetra-nucleotide motif

Number of Tetra-SSR

%

Unigenes

 AAAT

28

25.00

 

 AAAC

17

15.18

 

 AAAG

16

14.29

 

 AGAT

10

8.93

 

 AATC

8

7.14

 

 Others tetra-nucleotides

33

29.46

 

 Total

112

100

112