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Table 5 Single sequence repeat (SSR) statistics according to the type of motif, the percentage of each motif and the amount of unigenes with SSRs. Complete information about these markers is shown in Additional file 10

From: The first de novo transcriptome of pepino (Solanum muricatum): assembly, comprehensive analysis and comparison with the closely related species S. caripense, potato and tomato

Di-nucleotide motif Number of Di-SSR % Unigenes
 AG 123 48.62  
 AT 101 39.92  
 AC 29 11.46  
 Total 253 100 253
Tri-nucleotide motif Number of Tri-SSR % Unigenes
 AAG 191 27.02  
 AAC 103 14.57  
 AAT 101 14.29  
 ATC 93 13.15  
 ACC 68 9.61  
 AGG 56 7.92  
 AGC 50 7.07  
 ACT, ACG, CCG 45 6.36  
 Total 707 100 684
Tetra-nucleotide motif Number of Tetra-SSR % Unigenes
 AAAT 28 25.00  
 AAAC 17 15.18  
 AAAG 16 14.29  
 AGAT 10 8.93  
 AATC 8 7.14  
 Others tetra-nucleotides 33 29.46  
 Total 112 100 112