Skip to main content

Table 1 Enrichment of MapMan functional categories (BINs) of k-means assigned clusters containing differentially expressed transcripts comparing skins of large and small berries. The table contains detailed information of the cluster size, BIN code and associated description, and the Bonferroni-adjusted P-value (Adj. P-value <0.05). Only high-level BINs are presented in this table (up to one decimal or depth = 1)

From: Combined physiological, transcriptome, and cis-regulatory element analyses indicate that key aspects of ripening, metabolism, and transcriptional program in grapes (Vitis vinifera L.) are differentially modulated accordingly to fruit size

Cluster Size BIN BIN name Adj. P-value
1 472 16 secondary metabolism 0.000476
16.8 secondary metabolism.flavonoids 2.78E-07
18.2 Co-factor and vitamine metabolism.thiamine 0.043163
20.2 stress.abiotic 0.005947
33.1 development.storage proteins 0.002419
2 342 5.3 fermentation.ADH 0.00028
3 265 NA NA NA
4 884 10.7 cell wall.modification 0.00655
27 RNA 0.008355
27.3 RNA.regulation of transcription 2.15E-07
30 signalling 0.043608
30.3 signalling.calcium 7.64E-05
5 320 16 secondary metabolism 1.54E-07
16.8 secondary metabolism.flavonoids 2.81E-08
6 553 10 cell wall 8.42E-10
10.8 cell wall.pectin*esterases 0.002015
26 misc 0.001691
26.28 misc.GDSL-motif lipase 0.014839
30 signalling 0.001752
30.2 signalling.receptor kinases 0.000168
7 480 10 cell wall 0.002828
10.6 cell wall.degradation 0.033172
17 hormone metabolism 7.42E-05
17.1 hormone metabolism.abscisic acid 1.1E-08
20.2 stress.abiotic 0.002289
34 transport 0.025226
34.4 transport.nitrate 0.024422
8 166 15 metal handling 0.00843
33 development 0.041594
33.99 development.unspecified 0.012587
34 transport 0.005185
34.12 transport.metal 0.024644