Table 1 Enrichment of MapMan functional categories (BINs) of k-means assigned clusters containing differentially expressed transcripts comparing skins of large and small berries. The table contains detailed information of the cluster size, BIN code and associated description, and the Bonferroni-adjusted P-value (Adj. P-value <0.05). Only high-level BINs are presented in this table (up to one decimal or depth = 1)
Cluster | Size | BIN | BIN name | Adj. P-value |
|---|---|---|---|---|
1 | 472 | 16 | secondary metabolism | 0.000476 |
16.8 | secondary metabolism.flavonoids | 2.78E-07 | ||
18.2 | Co-factor and vitamine metabolism.thiamine | 0.043163 | ||
20.2 | stress.abiotic | 0.005947 | ||
33.1 | development.storage proteins | 0.002419 | ||
2 | 342 | 5.3 | fermentation.ADH | 0.00028 |
3 | 265 | NA | NA | NA |
4 | 884 | 10.7 | cell wall.modification | 0.00655 |
27 | RNA | 0.008355 | ||
27.3 | RNA.regulation of transcription | 2.15E-07 | ||
30 | signalling | 0.043608 | ||
30.3 | signalling.calcium | 7.64E-05 | ||
5 | 320 | 16 | secondary metabolism | 1.54E-07 |
16.8 | secondary metabolism.flavonoids | 2.81E-08 | ||
6 | 553 | 10 | cell wall | 8.42E-10 |
10.8 | cell wall.pectin*esterases | 0.002015 | ||
26 | misc | 0.001691 | ||
26.28 | misc.GDSL-motif lipase | 0.014839 | ||
30 | signalling | 0.001752 | ||
30.2 | signalling.receptor kinases | 0.000168 | ||
7 | 480 | 10 | cell wall | 0.002828 |
10.6 | cell wall.degradation | 0.033172 | ||
17 | hormone metabolism | 7.42E-05 | ||
17.1 | hormone metabolism.abscisic acid | 1.1E-08 | ||
20.2 | stress.abiotic | 0.002289 | ||
34 | transport | 0.025226 | ||
34.4 | transport.nitrate | 0.024422 | ||
8 | 166 | 15 | metal handling | 0.00843 |
33 | development | 0.041594 | ||
33.99 | development.unspecified | 0.012587 | ||
34 | transport | 0.005185 | ||
34.12 | transport.metal | 0.024644 |