Genome-wide SSR-based association mapping for fiber quality in nation-wide upland cotton inbreed cultivars in China

Table 3 Allelic variation loci associated with fiber quality and annotated genes

Allelic variation loci	Chromosome	Trait	Position (cM)	P-FDR	r²	Gene annotation
HAU0211	12	FU	10.192	3.77E-02	1.24	Homeodomain-like superfamily protein
		SF		4.48E-02	1.14	Homeodomain-like superfamily protein
HAU1355	18	FUHML	118.042	3.26E-02	0.76	WD40/YVTN repeat-like-containing domain
		FS		1.72E-02	1.08
		SF		3.40E-02	0.96
MON_CGR5167	11	FUHML	61.206	3.88E-02	1.04	basic helix-loop-helix (bHLH), DNA-binding superfamily protein
BNL3436	25	FS	0	3.45E-02	0.78	UDP-glycosyltransferase 73B4
NAU2564	7	FUHML	18.223	3.05E-02	1.17	basic helix-loop-helix (bHLH), DNA-binding superfamily protein
		SF		2.71E-02	1.63
		FS		3.53E-03	2.33
NAU6627	21	FS	90.434	1.10E-02	1.89	myosin 2
STV106	6	FUHML	0	1.88E-02	1.59	NAC domain containing protein 28
		MV		0.03775	1.19
		FU		4.59E-02	1.17
		SF		2.77E-02	1.75
		FE		4.38E-02	1.06

ISSN: 1471-2164