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Table 1 Genes involved in each process of cluster 7

From: Fungal and host transcriptome analysis of pH-regulated genes during colonization of apple fruits by Penicillium expansum

GO Term Gene id Genbank transcript id Description
Nucleobase transport PEXP_081890 KGO47390 Permease, cytosine/purine, uracil, thiamine, allantoin
  PEXP_004400 KGO37467 Permease, cytosine/purine, uracil, thiamine, allantoin
  PEXP_081870 KGO47388 Permease, cytosine/purine, uracil, thiamine, allantoin
Taurine metabolic process PEXP_099510 KGO46394 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
  PEXP_039450 KGO48081 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Beta-alanine metabolic process PEXP_099510 KGO46394 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
  PEXP_039450 KGO48081 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Transmembrane transport PEXP_023020 KGO42773 Major facilitator superfamily domain, general substrate transporter
  PEXP_104460 KGO36460 Major facilitator superfamily domain, general substrate transporter
  PEXP_019050 KGO45782 C4-dicarboxylate transporter/malic acid transport protein
  PEXP_083120 KGO38619 Major facilitator superfamily domain, general substrate transporter
  PEXP_105230 KGO41447 Major facilitator superfamily domain, general substrate transporter
  PEXP_012370 KGO49188 Major facilitator superfamily domain, general substrate transporter
  PEXP_060340 KGO45245 Iron permease FTR1
  PEXP_059590 KGO45345 Major facilitator superfamily domain, general substrate transporter
  PEXP_094700 KGO43568 Major facilitator superfamily domain, general substrate transporter
  PEXP_025230 KGO42652 Major facilitator superfamily domain, general substrate transporter
  PEXP_030850 KGO40270 ABC transporter, integral membrane type 1
  PEXP_078840 KGO37868 Major facilitator superfamily domain, general substrate transporter
Glutamate metabolic process PEXP_099510 KGO46394 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
  PEXP_039450 KGO48081 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Glutamate decarboxylase activity PEXP_099510 KGO46394 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
PEXP_039450 KGO48081 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Nucleobase transmembrane transporter activity PEXP_081890 KGO47390 Permease, cytosine/purine, uracil, thiamine, allantoin
PEXP_004400 KGO37467 Permease, cytosine/purine, uracil, thiamine, allantoin
  PEXP_081870 KGO47388 Permease, cytosine/purine, uracil, thiamine, allantoin
Cofactor binding PEXP_107000 KGO41320 Aldolase-type TIM barrel
  PEXP_068570 KGO46687 Aldolase-type TIM barrel
  PEXP_099510 KGO46394 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
  PEXP_080260 KGO38010 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
  PEXP_043260 KGO39485 Thiamine pyrophosphate enzyme, C-terminal TPP-binding
  PEXP_076130 KGO36094 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding
  PEXP_001130 KGO44422 Glyceraldehyde/Erythrose phosphate dehydrogenase family
  PEXP_039450 KGO48081 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Glucosylceramidase activity PEXP_081260 KGO47327 Glycoside hydrolase, family 30
3-isopropylmalate dehydratase activity PEXP_074470 KGO48717 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
N-acylphosphatidylethanolamine-specific phospholipase D activity PEXP_024950 KGO42624 N-acyl-phosphatidylethanolamine-hydrolysing phospholipase D
Transmembrane transporter activity PEXP_104460 KGO36460 Major facilitator superfamily domain, general substrate transporter
  PEXP_034210 KGO40038 CDR ABC transporter
  PEXP_019050 KGO45782 C4-dicarboxylate transporter/malic acid transport protein
  PEXP_105230 KGO41447 Major facilitator superfamily domain, general substrate transporter
  PEXP_081890 KGO47390 Permease, cytosine/purine, uracil, thiamine, allantoin
  PEXP_004400 KGO37467 Permease, cytosine/purine, uracil, thiamine, allantoin
  PEXP_030850 KGO40270 ABC transporter, integral membrane type 1
  PEXP_081870 KGO47388 Permease, cytosine/purine, uracil, thiamine, allantoin
Integral component of membrane PEXP_023020 KGO42773 Major facilitator superfamily domain, general substrate transporter
  PEXP_104460 KGO36460 Major facilitator superfamily domain, general substrate transporter
  PEXP_034210 KGO40038 CDR ABC transporter
  PEXP_019050 KGO45782 C4-dicarboxylate transporter/malic acid transport protein
  PEXP_083120 KGO38619 Major facilitator superfamily domain, general substrate transporter
  PEXP_054930 KGO44009 Major intrinsic protein
  PEXP_105230 KGO41447 Major facilitator superfamily domain, general substrate transporter
  PEXP_012370 KGO49188 Major facilitator superfamily domain, general substrate transporter
  PEXP_059590 KGO45345 Major facilitator superfamily domain, general substrate transporter
  PEXP_094700 KGO43568 Major facilitator superfamily domain, general substrate transporter
  PEXP_027630 KGO43014 Amino acid transporter, transmembrane
  PEXP_025230 KGO42652 Major facilitator superfamily domain, general substrate transporter
  PEXP_030850 KGO40270 ABC transporter, integral membrane type 1
  PEXP_038200 KGO47945 Mitochondrial substrate/solute carrier
  PEXP_078840 KGO37868 Major facilitator superfamily domain, general substrate transporter
Lysosome PEXP_081260 KGO47327 Glycoside hydrolase, family 30
3-Isopropylmalate dehydratase complex PEXP_074470 KGO48717 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3
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BMC Genomics

ISSN: 1471-2164

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