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Table 8 Relative expression (Pe/Cg) of selected genes in apple tissue infected with P. expansum or C. gloeosporioides

From: Fungal and host transcriptome analysis of pH-regulated genes during colonization of apple fruits by Penicillium expansum

Apple down-regulated genes Apple (Pe)/apple (Cg) Apple up-regulated genes Apple (Pe)/apple (Cg)
Programmed cell death protein 4-like 0.025/0.112 = 0.223 Histone deacetylase hdt3-like 0.70/1.21 = 0.583
Auxin-repressed kda isoform x1 0.002/0.009 = 0.222 Phenylalanine ammonia-lyase 1 9.41/3.38 = 2.781
ap2-like ethylene-responsive transcription factor at2g41710 isoform x2 0.015/0.063 = 0.238 Chalcone synthase 16.33/24.23 = 0.670
udp-glucose:glycoprotein glucosyltransferase 0.104/0.291 = 0.357 Peroxidase 47 98.83/10.55 = 9.368
Senescence-associated carboxylesterase 101-like 0.079/0.192 = 0.411 Respiratory burst oxidase homolog protein d-like 185.14/24.15 = 7.664
1-Aminocyclopropane-1-carboxylate oxidase 1 0.034/0.064 = 0.544 Lipoxygenase 490.05/205.74 = 2.381
Anthocyanidin 3-o-glucosyltransferase 5-like 0.007/0.041 = 0.169 Indole-3-acetic acid-induced protein arg2 9.97/6.49 = 1.535
Expansin 1 0.002/0.040 = 0.067 Zinc finger an1 domain-containing stress-associated protein 12-like 17.66/17.78 = 0.993
ap2-like ethylene-responsive transcription factor at2g41710 isoform x2 0.012/0.045 = 0.282 NADPH--cytochrome p450 reductase isoform x2 8.18/4.04 = 2.022
Lysine-specific histone demethylase 1 homolog 1-like 0.075/0.192 = 0.394 Ethylene-responsive transcription factor 2-like 33.81/33.83 = 0.999
   Serine threonine-protein kinase-like protein ccr4 11.12/1.83 = 6.049
  1. The relative expression of the apple genes was compared with healthy tissue