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Table 3 Rare SNPs in the wild C. remanei population that significantly increase in frequency after lab-adaptation

From: High-specificity detection of rare alleles with Paired-End Low Error Sequencing (PELE-Seq)

Position Ref Alt Wild allele frequency Wild allele depth Lab allele frequency Lab allele depth
2933656 G A 0.010233 11 0.111517 61
84255709 C A 0.018789 27 0.17717 149
89350272 A G 0.018276 60 0.122693 379
114867644 G A 0.017125 43 0.164325 386
127723967 C G 0.00235 31 0.103739 738
138506868 A C 0.013662 31 0.163548 236
141293514 T C 0.018643 25 0.275908 205
  1. Seven SNPs found below 2 % frequency in the wild C. remanei population increased in frequency at least five-fold in the lab-adapted population. The read depths listed are those of the detected rare allele, not the total read depth at that position. Read depths listed are for overlapping paired-end (OPE) reads