Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

BMC Genomics

Table 1 Data set characteristics

Subject ID	Phenotype	Sample	Runs	Total Reads	Processed Reads	Mapped (%)	Shannon’s Index
33	Female, Crohn’s	SAMN00829176	SRR49544 SRR497943 SRR497952	1775071	3478940	80.6 %	1.91
58	Female, Crohn’s	SAMN00829163	SRR497643 SRR497648 SRR497650	2049784	4025328	68.4 %	1.64
92	Female, Crohn’s	SAMN00829171	SRR497646 SRR497657 SRR504939	1950395	3848348	61.4 %	1.73
104	Male, Crohn’s	SAMN0082172	SRR497946 SRR497948 SRR497949	2175693	4284474	72.1 %	1.97
68	Male, Crohn’s	SAMN00829168	SRR497645 SRR497652 SRR497654	2084020	4113996	79.0 %	1.49
763820215	Female, Healthy	SAMN00078732	SRR063543 SRR063544 SRR063545	2395215	4744426	88.9 %	0.59
764042746	Female, Healthy	SAMN0036587	SRR063587 SRR063588 SRR063589	2260051	4463710	81.5 %	0.56
809635352	Female, Healthy	SAMN00043742	SRR063903 SRR063904	2820502	5533454	64.0 %	1.33
638754422	Female, Healthy	SAMN0075991	SRR061730 SRR061731	2944584	5823782	77.7 %	0.96
764143897	Female, Healthy	SAMN00071891	SRR063539 SRR063548 SRR063549	2496427	4945024	70.6 %	1.27
604812005	Male, Healthy	SAMN0006554	SRR063905 SRR063906	2680706	5287590	79.6 %	0.75
763435843	Male, Healthy	SAMN00037012	SRR063553 SRR063554 SRR063555	2513710	4962822	73.1 %	1.11
763961826	Male, Healthy	SAMN00040248	SRR063583 SRR063584 SRR063585	2436744	4798677	77.4 %	0.98

ISSN: 1471-2164