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Table 1 Data set characteristics

From: Graph mining for next generation sequencing: leveraging the assembly graph for biological insights

Subject ID Phenotype Sample Runs Total Reads Processed Reads Mapped (%) Shannon’s Index
33 Female, Crohn’s SAMN00829176 SRR49544 SRR497943 SRR497952 1775071 3478940 80.6 % 1.91
58 Female, Crohn’s SAMN00829163 SRR497643 SRR497648 SRR497650 2049784 4025328 68.4 % 1.64
92 Female, Crohn’s SAMN00829171 SRR497646 SRR497657 SRR504939 1950395 3848348 61.4 % 1.73
104 Male, Crohn’s SAMN0082172 SRR497946 SRR497948 SRR497949 2175693 4284474 72.1 % 1.97
68 Male, Crohn’s SAMN00829168 SRR497645 SRR497652 SRR497654 2084020 4113996 79.0 % 1.49
763820215 Female, Healthy SAMN00078732 SRR063543 SRR063544 SRR063545 2395215 4744426 88.9 % 0.59
764042746 Female, Healthy SAMN0036587 SRR063587 SRR063588 SRR063589 2260051 4463710 81.5 % 0.56
809635352 Female, Healthy SAMN00043742 SRR063903 SRR063904 2820502 5533454 64.0 % 1.33
638754422 Female, Healthy SAMN0075991 SRR061730 SRR061731 2944584 5823782 77.7 % 0.96
764143897 Female, Healthy SAMN00071891 SRR063539 SRR063548 SRR063549 2496427 4945024 70.6 % 1.27
604812005 Male, Healthy SAMN0006554 SRR063905 SRR063906 2680706 5287590 79.6 % 0.75
763435843 Male, Healthy SAMN00037012 SRR063553 SRR063554 SRR063555 2513710 4962822 73.1 % 1.11
763961826 Male, Healthy SAMN00040248 SRR063583 SRR063584 SRR063585 2436744 4798677 77.4 % 0.98