Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements

Table 1 Summary of de novo assembly and gene prediction

				Isolates
Isolate	Ina168	Y34^a	P131^a	GFSI1-7-2	Br48	Br58	Z2-1	Dig41
Number of corrected short reads (Million reads)	57.6			60.7	56.6	53.5	61.0	60.1
Total size (Gbp)	4.32			4.55	4.24	4.01	4.58	4.51
k-mer size	37			38	39	35	41	40
Number of contigs (> = 0.5 Kbp)	1811			1910	2082	2057	2048	3970
N80 (Kbp)	22.7			30.0	30.3	31.3	25.3	10.1
N50 (Kbp)	77.1			88.3	97.5	91.1	64.1	24.3
Max contig length (Kbp)	400.0			393.6	475.6	640.2	370.9	148.9
Total assembly size (Mbp)	38.0			39.1	40.7	40.2	39.5	41.3
Total number of genes	12,486	12,461	12,363	12,468	12,671	12,626	12,383	11,457
Number of completed genes	11,910	12,106	11,897	11,866	12,020	12,009	11,925	9204
Number of genes with the start codon	12,013	12,110	11,959	11,954	12,071	12,058	11,897	10,139
Number of predicted secretomes	1747	1724	1723	1770	1768	1746	1793	1309

^aY34 and P131 data are from Xue et al. [18]
SignalP was performed for genes with the start codon. We did not perform SignalP for genes without the start codon

ISSN: 1471-2164