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Table 1 Summary of de novo assembly and gene prediction

From: Host specialization of the blast fungus Magnaporthe oryzae is associated with dynamic gain and loss of genes linked to transposable elements

     Isolates     
Isolate Ina168 Y34a P131a GFSI1-7-2 Br48 Br58 Z2-1 Dig41
Number of corrected short reads (Million reads) 57.6    60.7 56.6 53.5 61.0 60.1
Total size (Gbp) 4.32    4.55 4.24 4.01 4.58 4.51
k-mer size 37    38 39 35 41 40
Number of contigs (> = 0.5 Kbp) 1811    1910 2082 2057 2048 3970
N80 (Kbp) 22.7    30.0 30.3 31.3 25.3 10.1
N50 (Kbp) 77.1    88.3 97.5 91.1 64.1 24.3
Max contig length (Kbp) 400.0    393.6 475.6 640.2 370.9 148.9
Total assembly size (Mbp) 38.0    39.1 40.7 40.2 39.5 41.3
Total number of genes 12,486 12,461 12,363 12,468 12,671 12,626 12,383 11,457
Number of completed genes 11,910 12,106 11,897 11,866 12,020 12,009 11,925 9204
Number of genes with the start codon 12,013 12,110 11,959 11,954 12,071 12,058 11,897 10,139
Number of predicted secretomes 1747 1724 1723 1770 1768 1746 1793 1309
  1. aY34 and P131 data are from Xue et al. [18]
  2. SignalP was performed for genes with the start codon. We did not perform SignalP for genes without the start codon