Table 2 Summary of PR gene families in the Theobroma cacao Criollo genome
Common name | Conserved domain | Number of loci in family | Best BLASTp hit (E-value) |
|---|---|---|---|
PR-1 CAP domain protein | SCP (smart00198) | 14 | 3.00E-53 |
PR-2 β-1,3-glucanase | glyco hydro 17 (pfam00332) | 43 | 7.00E-102 |
PR-3 Chitinase Class I, II, IV, VII | chitinase glyco hydro 19 (cd00325) | 11 | 3.00E-79 |
PR-4 Chitinase-Hevein-like | barwin (pfam00967) | 8 | 3.00E-49 |
PR-5 Thaumatin-like | thaumatin (pfam00314) | 30 | 5.00E-72 |
PR-6 Proteinase-inhibitor | potato inhibitor family (pfam00280) | 8 | 5.00E-11 |
PR-7 Endoproteinase | PA subtilisin like (cd02120) | 54 | 0 |
PR-8 Chitinase Class III | GH18 hevamine XipI class III (cd02877) | 14 | 2.00E-91 |
PR-9 Peroxidase | secretory peroxidase (cd00693) | 81 | 4.00E-113 |
PR-10 Ribonuclease-like | Bet v1 (pfam00407) | 23 | 3.00E-48 |
PR-11 Chitinase class V | GH18 plant chitinase class v (cd02879) | 11 | 3.00E-116 |
PR-12 Defensin | gamma-thionin (pfam00304) | 3 | 7.00E-10 |
PR-13 Thionin | thionin (pfam00321) | 0 | NA |
PR-14 Lipid-transfer Protein | nsLTP1 (cd01960) | 16 | 6.00E-19 |
PR-15 Germin/Oxalate Oxidase | Two cupin 1 (pfam00190) domains | 0 | NA |
PR-16 Germin-like/Oxalate Oxidase-like | Two cupin 1 (pfam00190) domains | 38 | 2.00E-52 |
PR-17 Unknown | BSP (pfam04450) | 5 | 7.00E-90 |
| Â | Total | 359 loci (38 unassembled) | Â |