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Table 3 Genes of the vertebrate digestive system identified in the Atlantic halibut GI-tract transcriptome

From: The transcriptome of metamorphosing flatfish

Contig ID Protein name Acronym Accession no. Organism E-value Biological role
lcgut_c14148 Adenosine deaminase Ada Q4FK28 Mus musculus 1E-41 Embryonic digestive tract development
lcgut_c24687 Protein kinase domain-containing protein, cytoplasmic Pkdcc Q5RJI4 Mus musculus 2E-46
lcgut_c25681 Transforming growth factor beta receptor type 3 isoform b precursor Tgfbr3 Q90998 Gallus gallus 4E-36
lcgut_c26069 Sal-like protein 1 Sall1 Q6P5E3 Mus musculus 1E-67
lcgut_c31048 Forkhead box protein F1 Foxf1 Q28BS5 Xenopus tropicalis 1E-55
lcgut_c34421 Proprotein convertase subtilisin/kexin type 5 Pcsk5 Q04592 Mus musculus 1E-152
lcgut_c17559 Ribosomal protein S6 kinase Rps6ka3a Q7ZVH8 Danio rerio 5E-75 Digestive tract development
lcgut_c33030 TGF-beta receptor type-2 Tgfbr2 P38438 Rattus norvegicus 9E-40
lcgut_c35109 G2/mitotic-specific cyclin-B1 Ccnb1 P24860 Mus musculus 7E-43
lcgut_c901 Cytochrome P450 family 1 subfamily a polypeptide 1 Cyp1a1 Q05A20 Mus musculus 3E-156
lcgut_c17435 Retinoid X nuclear receptor alpha Nr2b1 F1D8Q5 Homo sapiens 1E-76 Midgut development
lcgut_c186 Retinal dehydrogenase 1 Aldh1a1 P24549 Mus musculus 2E-179
lcgut_c24118 Ornithine transcarbamylase, isoform CRA_a Otc Q543H3 Mus musculus 3E-72
lcgut_c2518 Arginase-2, mitochondrial Arg2 O08691 Mus musculus 2E-56
lcgut_c2565 Proto-oncogene tyrosine-protein kinase receptor Ret Ret P07949 Homo sapiens 3E-35
lcgut_rep_c3756 Hydroxymethylglutaryl-coa synthase, mitochondrial Hmgcs2 P54869 Mus musculus 5E-171
lcgut_c25668 Homeobox protein Nkx-3.2 Nkx3-2 P97503 Mus musculus 6E-35 Intestinal epithelial cell development
lcgut_c374 GATA-binding protein 6 Gata6 ENSDARP00000051997 Danio rerio 0
lcgut_c981 Protein-tyrosine kinase 6 Ptk6 Q64434 Mus musculus 9E-64
lcgut_rep_c3687 Anterior gradient protein 2 homolog Agr2 Q5RZ65 Danio rerio 7E-66
lcgut_rep_c15924 Polypyrimidine tract binding protein 1a Ptbp1a Q503D3 Danio rerio 7E-112 Intestinal epithelial structure maintenance
lcgut_c2805 Heart and neural crest derivatives expressed transcript 2 Hand2 Q5XJD8 Danio rerio 7E-49 Determination of intestine left/right asymmetry
lcgut_c17287 Platelet-derived growth factor receptor alpha Pdgfra P26618 Mus musculus 4E-86 Embryonic digestive tract morphogenesis
lcgut_c2545 Sonic hedgehog protein A Shha Q92008 Danio rerio 2E-41
lcgut_c30553 DNA-binding protein inhibitor ID-2 Id2 Q6PBD7 Xenopus tropicalis 8E-44
lcgut_c32097 GATA binding protein 4 Gata4 ENSDARP00000090333 Danio rerio 2E-42
lcgut_c37022 Transcription factor 21 Tcf21 Q32PV5 Danio rerio 4E-69
lcgut_c17569 Hepatocyte nuclear factor 1-beta-A Hnf1ba A1L1N5 Danio rerio 5E-66 Digestive tract morphogenesis
lcgut_c19328 Caudal type homeobox 1 Cdx1 ENSP00000367043 Homo sapiens 3E-31
lcgut_c20926 Mib protein Mib B3DGQ0 Danio rerio 8E-45
lcgut_c22447 Ephrin type-B receptor 3 Ephb3 P54754 Mus musculus 1E-39
lcgut_c22825 Probable rna-binding protein 19 Rbm19 Q6DRI6 Danio rerio 3E-32
lcgut_c25556 Vang-like 2 (Van gogh, Drosophila), isoform CRA_b Vangl2 D3YY75 Mus musculus 4E-38
lcgut_c26 Claudin 15 like Cldn15a Q7T2E7 Danio rerio 3E-82
lcgut_c27711 Secreted frizzled-related protein 1 Sfrp1 Q8C4U3 Mus musculus 1E-49
lcgut_c38245 Protein kinase C iota type Prkci Q90XF2 Danio rerio 2E-87
lcgut_c14247 Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase 3 Gcnt3 Q5JCT0 Mus musculus 2E-57 Intestinal absorption
lcgut_c14318 2-acylglycerol O-acyltransferase 2 Mogat2 Q80W94 Mus musculus 8E-73
lcgut_c425 Sodium/glucose cotransporter 1 Slc5a1 F6XY79 Mus musculus 6E-142
lcgut_rep_c3628 Fatty acid binding protein 2, intestinal Fabp2 Q53YP5 Mus musculus 9E-47
lcgut_rep_c38188 Fatty acid binding protein 1, liver Fabp1 Q3V2F7 Mus musculus 9E-35
lcgut_c2583 ATP-binding cassette sub-family G member 5 Abcg5 Q99PE8 Mus musculus 6E-168 Intestinal cholesterol absorption
lcgut_c280 Niemann-Pick C1-like protein 1 Npc1l1 Q6T3U4 Mus musculus 6E-140
lcgut_c30941 Caveolin Cav1 Q6YLH9 Danio rerio 3E-65
lcgut_c3243 Pancreatic triacylglycerol lipase Pnlip Q6P8U6 Mus musculus 6E-99
lcgut_c34406 Sterol O-acyltransferase 2 Soat2 O75908 Homo sapiens 1E-89
lcgut_c508 ATP-binding cassette sub-family G member 8 Abcg8 Q9DBM0 Mus musculus 0
lcgut_rep_c3552 Pancreatic lipase pl D4P6H2 Sus scrofa 4E-83
lcgut_rep_c3840 Annexin Anxa2b Q6DHD8 Danio rerio 2E-133
lcgut_c20773 Cholecystokinin receptor type A Cckar O08786 Mus musculus 1E-47 Gastric acid secretion/Regulation
lcgut_c14119 Pepsinogen A form iib precursor Pep2b AAD56284 Pseudopleuronectes americanus 0
lcgut_c1099 Bone morphogenetic protein 2a Bmp2a ENSDARP00000013686 Danio rerio 3E-35  
lcgut_c17255 Histamine N-methyltransferase Hnmt ENSORLP00000025386 Oryzias latipes 1E-87
lcgut_c17921 MAD homolog 9 Smad9 ENSDARP00000031108 Danio rerio 1E-85
lcgut_c20823 Histamine receptor H2 Hrh2 ENSORLP00000004946 Oryzias latipes 2E-24
lcgut_c22281 Epidermal growth factor receptor a Egfra ENSDARP00000125265 Danio rerio 4E-42
lcgut_c25854 SRY-box containing gene 2 Sox2 ENSDARP00000095266 Danio rerio 2E-21
lcgut_c28926 Forkhead box A1 (HNF3?) Foxa1 ENSDARP00000002213 Danio rerio 7E-44
lcgut_rep_c6868 Protein wntmber 5a Wnt5a F1Q8M2 Danio rerio 5E-26
  1. List of candidate genes in the Atlantic halibut GI-tract transcriptome assembly that are involved in vertebrate digestive system development and morphogenesis. The contig ID of the GI-tract transcriptome assembly, protein name, acronym, accession number (no.), organism and e-value are shown for each protein and they are grouped by biological function (when identified)