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Table 1 Summary of ROH consensus regions present amongst all 3 populations, by chromosome

From: Genomic analysis of Ugandan and Rwandan chicken ecotypes using a 600 k genotyping array

Chr N (Consensus) Mean (# of birds) Mean ROH length (Kb) Sum ROH length (Kb) Mean number Of SNPs Sum Of SNPs
1 46 13.83 298.88 13748.66 124.37 5721
2 20 16.70 572.33 11446.66 198.65 3973
3 17 12.65 326.66 5553.24 144.35 2454
4 21 17.19 153.77 3229.19 64.00 1344
5 9 14.33 482.82 4345.38 153.00 1377
6 4 10.75 256.77 1027.10 143.50 574
7 7 13.43 211.29 1479.02 102.14 715
8 6 21.33 218.13 1308.76 107.17 643
9 3 11.67 204.61 613.82 138.67 416
10 7 11.57 171.48 1200.37 158.29 1108
11 3 20.67 371.64 1114.93 207.00 621
12 1 12.00 1252.64 1252.64 778.00 778
13 1 10.00 984.15 984.15 408.00 408
14 1 18.00 1034.33 1034.33 645.00 645
15 2 10.50 239.67 479.33 182.50 365
19 2 13.00 511.86 1023.72 276.50 553
  1. Each population is represented in each consensus group by at least one bird. Only consensus groups with 15 or more individuals shown. Consensus regions in between flanking markers were annotated for genes and coding non-synonymous and splice site category SNPs