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Table 3 Results of Bivariate GWAS Analyses for C-Reactive Protein and Triglycerides Levels

From: Bivariate genome-wide association study identifies novel pleiotropic loci for lipids and inflammation

SNP

Chromosome

Position

Effect Allele

C-reactive protein

Triglycerides

Pleiotropy significance

Gene

Beta

P-value

Beta

P-value

rs4660808

1

39791096

T

0.046

8.6 × 10−10

0.028

3.1 × 10−7

2.2 × 10−13

PABPC4

rs11208722

1

65943589

A

−0.083

1.2 × 10−32

0.012

0.02

8.1 × 10−36

LEPR

rs1127311

1

152823287

A

−0.031

9.3 × 10−7

0.012

5.5 × 10−3

6.4 × 10−9

ADAR

rs12755606

1

157936960

C

−0.153

3.0 × 10−112

0.012

0.01

4.0 × 10−120

CRP

rs1260326

2

27584444

T

0.089

1.7 × 10−42

0.116

5.7 × 10−133

4.4 × 10−151

GCKR

rs13409360

2

113554573

A

0.048

1.3 × 10−12

−0.013

8.6 × 10−3

5.3 × 10−15

IL1F10

rs645040

3

137409312

T

−0.023

2.5 × 10−3

0.030

2.5 × 10−8

4.6 × 10−11

MSL2L1

rs2524163

6

31367558

T

0.025

1.5 × 10−4

0.027

1.7 × 10−8

7.9 × 10−10

HLA-C

rs9987289

8

9220768

A

−0.079

2.1 × 10−12

0.020

0.02

2.9 × 10−14

PPP1R3B

rs10435719

8

11814313

T

0.026

7.6 × 10−5

−0.022

4.1 × 10−6

2.0 × 10−10

CTSB

rs1441759

8

19909843

C

0.11

3.3 × 10−4

0.125

2.1 × 10−8

2.0 × 10−9

LPL

rs10832027

11

13313759

A

0.032

8.5 × 10−7

0.020

1.1 × 10−4

9.4 × 10−9

ARNTL

rs174546

11

61326406

T

−0.017

0.01

0.048

5.4 × 10−24

5.2 × 10−27

FADS1

rs2686555

12

119579555

A

−0.059

1.7 × 10−19

0.010

0.03

1.6 × 10−21

CABP1

rs11508026

16

55556829

T

0.014

0.03

−0.038

1.3 × 10−12

3.1 × 10−14

CETP

rs571312

18

55990749

A

0.033

3.5 × 10−5

0.026

1.2 × 10−5

2.8 × 10−8

MC4R

rs10401969

19

19268718

T

−0.031

0.02

0.112

1.6 × 10−29

1.6 × 10−32

SF4

rs1688043

19

40245181

T

−0.038

2.4 × 10−3

0.037

1.2 × 10−5

4.1 × 10−8

HPN

rs4420638

19

50114786

A

0.24

1.0 × 10−129

−0.068

5.4 × 10−22

1.7 × 10−171

APOC1

rs4465830

20

44018827

A

0.036

7.0 × 10−6

−0.050

2.0 × 10−17

2.0 × 10−24

ZNF335/PLTP

rs2277844

22

36907461

A

−0.018

5.7 × 10−3

0.025

1.5 × 10−7

9.2 × 10−10

PLA2G6

  1. Abbreviations: SNP single nucleotide polymorphism
  2. For both CRP and the lipid phenotype, the effect estimates are according to the original GWAS
  3. Chromosome and position are in NCBI genome build 36
  4. β coefficient for CRP represents 1-unit change in the natural log–transformed CRP (mg/L) per copy increment in the coded allele
  5. Beta coefficient for triglycerides represents 1-unit change in the standardized triglyceride levels per copy increment in the coded allele