Table 1 Number of differentially expressed genes (DEGs) identified by all pairwise comparisons

2Hb8

R NIL Fusarium inoculated – R NIL mock inoculated (R_F/M)

11

21

415

192

M69 Fusarium inoculated – M69 mock inoculated (M69_F/M)

45

167

1283

354

R NIL Fusarium inoculated – M69 Fusarium inoculated (R/M69_F)

350

80

321

426

R NIL mock inoculated – M69 mock inoculated (R/M69_M)

355

70

401

282

6Hb7

R NIL Fusarium inoculated – R NIL mock inoculated (R_F/M)

100

14

304

15

Lacey Fusarium inoculated – Lacey mock inoculated (Lacey_F/M)

12

53

693

227

R NIL Fusarium inoculated – Lacey Fusarium inoculated (R/Lacey_F)

66

36

5

10

R NIL mock inoculated – Lacey mock inoculated (R/Lacey_M)

12

89

4

19